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Started:
January 22, 2022 22:03
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Completed:
23:09:35
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Failed:
No.
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Status:
completed
Events (most recent first):
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23:09:35
(ends)
Complete
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23:09:35
(ends)
TOTAL TIME: 65.8m
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23:09:35
(starts)
TraitBank::Denormalizer.update_resource_vernaculars
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23:09:35
(starts)
Running
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23:09:32
(starts)
Resource#fix_native_nodes
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23:09:32
(starts)
Running
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23:09:32
(warns)
Trait Publishing failed: At https://eol.org/data/tdfidbdt/publish_metadata_chunk_6.csv @ position 21004581 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Davis,W.J. ",,,,,,,,false
OccurrenceMetadatum-48822636,R1091-PK249649312,http://rs.tdwg.org/dwc/terms/identifiedBy,"DD' FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:560:in `merge_triple' << /app/lib/trait_bank/slurp.rb:447:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:447:in `each' << /app/lib/trait_bank/slurp.rb:447:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:331:in `block (2 levels) in load_csv'
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23:09:16
(warns)
FAILED on build_nodes query (MetaData), will re-try once...
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23:09:16
(warns)
At https://eol.org/data/tdfidbdt/publish_metadata_chunk_6.csv @ position 21004581 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Davis,W.J. ",,,,,,,,false
OccurrenceMetadatum-48822636,R1091-PK249649312,http://rs.tdwg.org/dwc/terms/identifiedBy,"DD'
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23:09:04
(infos)
Importing 250000 rows from publish_metadata_chunk_6.csv
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22:54:03
(infos)
Waiting 900 seconds for the last 'chunk' to be added to neo4j...
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22:53:00
(infos)
Importing 250000 rows from publish_metadata_chunk_5.csv
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22:40:29
(infos)
Waiting 750 seconds for the last 'chunk' to be added to neo4j...
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22:39:12
(infos)
Importing 250000 rows from publish_metadata_chunk_4.csv
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22:29:12
(infos)
Waiting 600 seconds for the last 'chunk' to be added to neo4j...
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22:27:52
(infos)
Importing 250000 rows from publish_metadata_chunk_3.csv
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22:20:22
(infos)
Waiting 450 seconds for the last 'chunk' to be added to neo4j...
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22:19:08
(infos)
Importing 250000 rows from publish_metadata_chunk_2.csv
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22:14:07
(infos)
Waiting 300 seconds for the last 'chunk' to be added to neo4j...
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22:13:09
(infos)
Importing 250000 rows from publish_metadata_chunk_1.csv
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22:13:09
(warns)
Found 6633106 rows, will break up into 250000
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22:13:08
(infos)
adding new metadata
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22:10:50
(infos)
Importing 250000 rows from publish_traits_chunk_2.csv
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22:08:14
(infos)
Importing 250000 rows from publish_traits_chunk_1.csv
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22:08:14
(warns)
Found 475433 rows, will break up into 250000
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22:08:13
(infos)
adding new traits
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22:08:13
(infos)
removing all traits
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22:07:59
(infos)
polling for trait diff metadata: /resources/1091/publish_diffs.json
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22:07:59
(starts)
#publish_traits = TraitBank::Slurp.load_resource_from_repo
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22:07:59
(starts)
Running
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22:07:58
(starts)
Fixing native nodes...
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22:07:58
(warns)
Skipping reindexing. You should reindex soon.
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22:07:58
(infos)
importing 359 Pages
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22:07:58
(infos)
importing 1000 Pages
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22:07:57
(infos)
importing 1000 Pages
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22:07:57
(infos)
importing 1000 Pages
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22:07:57
(infos)
importing 1000 Pages
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22:07:57
(infos)
importing 1000 Pages
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22:07:56
(infos)
importing 1000 Pages
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22:07:56
(infos)
importing 1000 Pages
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22:07:56
(infos)
importing 1000 Pages
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22:07:56
(infos)
importing 1000 Pages
-
22:07:55
(infos)
importing 1000 Pages
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22:07:55
(infos)
importing 1000 Pages
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22:07:55
(infos)
importing 1000 Pages
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22:07:55
(infos)
importing 1000 Pages
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22:07:55
(infos)
importing 1000 Pages
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22:07:54
(infos)
importing 1000 Pages
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22:07:54
(infos)
importing 1000 Pages
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22:07:54
(infos)
importing 1000 Pages
