Import Log for ecology literature

Started: April 19, 2021 11:42
Completed: 11:52:01.000
Failed: No.
Status: completed

Events (most recent first):

show all (335)

11:52:01.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:262:in `block (2 levels) in load_csv' << /app/lib/trait_bank/slurp.rb:261:in `each' << /app/lib/trait_bank/slurp.rb:261:in `block in load_csv' << /app/lib/trait_bank/slurp.rb:302:in `break_up_large_files' << /app/lib/trait_bank/slurp.rb:254:in `load_csv'
11:50:39.000 (warns) There were NO new pages, skipping...
11:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_content_sections.tsv [404] (10 bytes); skipping
11:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_references.tsv [404] (10 bytes); skipping
11:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_image_info.tsv [404] (10 bytes); skipping
11:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_attributions.tsv [404] (10 bytes); skipping
11:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_media.tsv [404] (10 bytes); skipping
11:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_articles.tsv [404] (10 bytes); skipping
11:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_vernaculars.tsv [404] (10 bytes); skipping
11:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_identifiers.tsv [404] (10 bytes); skipping
11:50:32.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_bibliographic_citations.tsv [404] (10 bytes); skipping
11:50:32.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_referents.tsv [404] (10 bytes); skipping
11:50:32.000 (warns) All existing content has been destroyed for the resource.
11:49:21.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:262:in `block (2 levels) in load_csv' << /app/lib/trait_bank/slurp.rb:261:in `each' << /app/lib/trait_bank/slurp.rb:261:in `block in load_csv' << /app/lib/trait_bank/slurp.rb:302:in `break_up_large_files' << /app/lib/trait_bank/slurp.rb:254:in `load_csv'
11:47:59.000 (warns) There were NO new pages, skipping...
11:47:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_content_sections.tsv [404] (10 bytes); skipping
11:47:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_references.tsv [404] (10 bytes); skipping
11:47:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_image_info.tsv [404] (10 bytes); skipping
11:47:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_attributions.tsv [404] (10 bytes); skipping
11:47:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_media.tsv [404] (10 bytes); skipping
11:47:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_articles.tsv [404] (10 bytes); skipping
11:47:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_vernaculars.tsv [404] (10 bytes); skipping
11:47:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_identifiers.tsv [404] (10 bytes); skipping
11:47:52.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_bibliographic_citations.tsv [404] (10 bytes); skipping
11:47:52.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_referents.tsv [404] (10 bytes); skipping
11:47:52.000 (warns) All existing content has been destroyed for the resource.
11:45:21.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:262:in `block (2 levels) in load_csv' << /app/lib/trait_bank/slurp.rb:261:in `each' << /app/lib/trait_bank/slurp.rb:261:in `block in load_csv' << /app/lib/trait_bank/slurp.rb:302:in `break_up_large_files' << /app/lib/trait_bank/slurp.rb:254:in `load_csv'
11:43:59.000 (warns) Skipping reindexing. You should reindex soon.
11:43:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_content_sections.tsv [404] (10 bytes); skipping
11:43:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_references.tsv [404] (10 bytes); skipping
11:43:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_image_info.tsv [404] (10 bytes); skipping
11:43:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_attributions.tsv [404] (10 bytes); skipping
11:43:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_media.tsv [404] (10 bytes); skipping
11:43:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_articles.tsv [404] (10 bytes); skipping
11:43:53.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_vernaculars.tsv [404] (10 bytes); skipping
11:43:52.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_identifiers.tsv [404] (10 bytes); skipping
11:43:52.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_bibliographic_citations.tsv [404] (10 bytes); skipping
11:43:52.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_referents.tsv [404] (10 bytes); skipping
11:43:52.000 (warns) All existing content has been destroyed for the resource.