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Import Log for Global Biotic Interactions

  • Started: June 12, 2020 09:18
  • Completed: 11:34:17.000
  • Failed: 10:18:54.000
  • Status: completed

Events (most recent first):

show warnings (22)
  • 10:49:55.000 (warns) MISSING http://content.eol.org/data/Globi/publish_content_sections.tsv [404] (10 bytes); skipping
  • 10:49:55.000 (warns) MISSING http://content.eol.org/data/Globi/publish_references.tsv [404] (10 bytes); skipping
  • 10:49:54.000 (warns) MISSING http://content.eol.org/data/Globi/publish_image_info.tsv [404] (10 bytes); skipping
  • 10:49:54.000 (warns) MISSING http://content.eol.org/data/Globi/publish_attributions.tsv [404] (10 bytes); skipping
  • 10:49:54.000 (warns) MISSING http://content.eol.org/data/Globi/publish_media.tsv [404] (10 bytes); skipping
  • 10:49:54.000 (warns) MISSING http://content.eol.org/data/Globi/publish_articles.tsv [404] (10 bytes); skipping
  • 10:49:54.000 (warns) MISSING http://content.eol.org/data/Globi/publish_vernaculars.tsv [404] (10 bytes); skipping
  • 10:47:59.000 (warns) MISSING http://content.eol.org/data/Globi/publish_identifiers.tsv [404] (10 bytes); skipping
  • 10:47:59.000 (warns) MISSING http://content.eol.org/data/Globi/publish_bibliographic_citations.tsv [404] (10 bytes); skipping
  • 10:47:44.000 (warns) MISSING http://content.eol.org/data/Globi/publish_referents.tsv [404] (10 bytes); skipping
  • 11:34:18.000 (ends) Complete
  • 11:34:17.000 (ends) TOTAL TIME: 74.5m
  • 11:34:10.000 (starts) Resource#fix_native_nodes
  • 11:34:10.000 (warns) Trait Publishing failed: Mysql2::Error::ConnectionError: Lost connection to MySQL server during query: SELECT pages.id, nodes.canonical_form FROM `pages` INNER JOIN `nodes` ON `nodes`.`id` = `pages`.`native_node_id` WHERE `pages`.`id` IN (1, 100015, 1000165, 1000205, 1000210, 1000231, 1000260, 1000267, 1000268, 1000269, 1000272, 1000277, 1000287, 1000300, 1000309, 1000310, 1000313, 1000326, 1000327, 1000328, 1000329, 1000330, 1000331, 1000332, 1000415, 1000464, 1000484, 10005, 1000506, 1000529, 1000539, 1000543, 1000568, 1000626, 100066, 1000698, 10007, 100074, 100075, 1000790, 1000843, 1000844, 1000855, 1000856, 1000950, 1000952, 1000955, 1001, 1001033, 1001056, 1001057, 1001065, 1001069, 1001090, 1001107, 1001152, 1001170, 1001172, 1001179, 1001180, 1001236, 1001250, 1001268, 1001270, 1001272, 1001274, 1001275, 1001279, 1001381, 1001422, 1001434, 1001435, 1001445, 1001447, 1001460, 1001479, 1001504, 1001505, 1001510, 1001513, 1001520, 1001538, 1001545, 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1020036, 1020039, 1020043, 1020068, 1020113, 1020118, 1020119, 1020122, 1020158, 1020183, 1020186, 1020187, 102021, 1020212, 10202268, 1020228, 1020243, 1020250, 1020261, 1020294, 1020424, 1020435, 1020437, 1020438, 1020447, 1020451, 1020495, 1020582, 1020626, 1020643, 1020669, 1020694, 1020743, 1020760, 1020781, 1020790, 1020890, 1020936, 1020971, 1021, 1021011, 10211, 102112, 1021223, 102123, 102127, 1021336, 10213382, 1021341, 1021376, 1021421, 1021429, 1021443, 1021452, 1021503, 1021505, 1021513, 1021521, 1021531, 1021534, 1021562, 1021609, 10216330, 1021643, 1021691, 1021696, 1021702, 1021728, 1021729, 1021749, 1021777, 1021792, 102180, 1021810, 1021813, 1021823, 1021856, 1021867, 1021870, 1021871, 1021882, 1021895, 1021901, 1021950, 1021952, 1021965, 1021966, 1021967, 1021996, 1021997, 1022, 10220222, 1022028, 1022029, 1022031, 10220422, 1022043, 1022089, 1022121, 1022132, 1022150, 1022155, 1022158, 1022196, 1022229, 102226, 1022266, 1022301, 1022339, 1022342, 1022354, 1022393, 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1025159, 1025163, 1025175, 1025184, 1025186, 1025205, 1025209, 1025223, 1025225, 1025234, 1025253, 1025257, 1025258, 1025277, 1025284, 1025287, 1025370, 1025372, 1025387, 1025391, 1025392, 1025408, 1025412, 1025413, 1025427, 1025429, 1025432, 1025434, 1025438, 1025441, 1025474, 1025530, 1025535, 1025542, 1025571, 1025573, 1025584, 102559, 1025628, 1025629, 1025638, 1025641, 1025670, 1025751, 1025763, 1025769, 1025839, 1025887, 1025925, 1025945, 1025949, 1025953, 1026001, 1026003, 1026011, 1026014, 1026018, 1026033, 1026034, 1026059, 1026064, 1026091, 1026110, 1026116, 1026145, 1026150, 1026309, 1026312, 1026313, 1026315, 1026318, 1026320, 1026326, 1026369, 10265, 1026594, 1026599, 1026697, 1026720, 1026730, 1026742, 1026809, 1026812, 1026819, 102683, 1026853, 102686, 1026916, 1026959, 1026963, 1026964, 1026967, 1026968, 1026969, 1026970, 1026973, 1027008, 1027009, 1027010, 1027097, 102710, 1027285, 1027310, 1027551, 1027568, 102759, 1027764, 1027767, 10281708, 102819, 1028198, 1028207, 1028212, 102847, 1028518, 1028523, 1028529, 1028538, 1028542, 1028546, 1028547, 1028551, 1028557, 1028558, 1028562, 1028564, 1028567, 1028568, 1028571, 1028585, 1028586, 1028594, 1028596, 10285992, 102860, 1028603, 1028614, 1028625, 1028639, 10286526, 1028653, 1028658, 1028659, 1028687, 1028688, 1028696, 1028699, 1028702, 1028708, 1028710, 1028711, 1028713, 1028724, 1028730, 1028734, 1028735, 1028738, 1028741, 1028742, 1028743, 1028745, 1028750, 1028765, 1028774, 1028775, 1028777, 1028779, 1028795, 1028796, 1028800, 1028804, 1028815, 1028816, 1028853, 10288575, 102886, 1028880, 1028885, 1028897, 1028899, 1028900, 1028912, 1028930, 1028931, 1028932, 1028944, 1028947, 1028972, 1028973, 1028997) FROM /usr/local/bundle/gems/mysql2-0.5.3/lib/mysql2/client.rb:131:in `_query' << /app/app/support/trait_bank/denormalizer.rb:39:in `block in set_canonicals_by_page_id' << /app/app/support/trait_bank/denormalizer.rb:38:in `set_canonicals_by_page_id' << /app/app/support/trait_bank/denormalizer.rb:15:in `set_canonicals_by_page_id' << /app/app/models/trait_bank/slurp.rb:77:in `fix_page_names_for_new_pages' << /app/app/models/trait_bank/slurp.rb:56:in `post_load_cleanup'
  • 10:26:01.000 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 10:26:01.000 (starts) Remove traits
  • 10:26:01.000 (starts) Fixing native nodes...
  • 10:26:01.000 (warns) Skipping reindexing. You should reindex soon.
  • 10:26:01.000 (infos) importing 283 Pages
  • 10:26:00.000 (infos) importing 1000 Pages
  • 10:26:00.000 (infos) importing 1000 Pages
  • 10:26:00.000 (infos) importing 1000 Pages
  • 10:25:59.000 (infos) importing 1000 Pages
  • 10:25:59.000 (infos) importing 1000 Pages
  • 10:25:59.000 (infos) importing 1000 Pages
  • 10:25:59.000 (infos) importing 1000 Pages
  • 10:25:58.000 (infos) importing 1000 Pages
  • 10:25:58.000 (infos) importing 1000 Pages
  • 10:25:58.000 (infos) importing 1000 Pages
  • 10:25:57.000 (infos) importing 1000 Pages
  • 10:25:57.000 (infos) importing 1000 Pages
  • 10:25:57.000 (infos) importing 1000 Pages
  • 10:25:56.000 (infos) importing 1000 Pages
  • 10:25:56.000 (infos) importing 1000 Pages
  • 10:25:56.000 (infos) importing 1000 Pages
  • 10:25:55.000 (infos) importing 1000 Pages
  • 10:25:55.000 (infos) importing 1000 Pages
  • 10:25:54.000 (infos) importing 1000 Pages
  • 10:25:54.000 (infos) importing 1000 Pages
  • 10:25:54.000 (infos) importing 1000 Pages
  • 10:24:51.000 (starts) create_new_pages
  • 10:24:49.000 (starts) PageCreator
  • 10:24:49.000 (starts) restoring vernacular preferences...
  • 10:24:45.000 (starts) #propagate_ids ContentSection
  • 10:24:41.000 (starts) #import ContentSection
  • 10:24:41.000 (warns) MISSING http://content.eol.org/data/Globi/publish_content_sections.tsv [404] (10 bytes); skipping
  • 10:24:41.000 (starts) ContentSection
  • 10:24:41.000 (starts) #propagate_ids Reference
  • 10:24:41.000 (starts) #import Reference
  • 10:24:41.000 (warns) MISSING http://content.eol.org/data/Globi/publish_references.tsv [404] (10 bytes); skipping
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