Import Log for OBIS environmental data records

• Started: April 04, 2021 08:30
• Completed: 08:57:09.000
• Failed: No.
• Status: completed

Events (most recent first):

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• 08:57:09.000 (ends) Complete
• 08:57:09.000 (ends) TOTAL TIME: 26.8m
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_content_sections.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_references.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_image_info.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_attributions.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_media.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_articles.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_vernaculars.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_node_ancestors.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_scientific_names.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_identifiers.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_bibliographic_citations.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_nodes.tsv
• 08:57:09.000 (infos) Removing /app/tmp/obis_environment_referents.tsv
• 08:57:07.000 (starts) Resource#fix_native_nodes
• 08:57:07.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:449:in `merge_triple' << /app/lib/trait_bank/slurp.rb:348:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:348:in `each' << /app/lib/trait_bank/slurp.rb:348:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:246:in `block (2 levels) in load_csv'
• 08:51:27.000 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
• 08:51:27.000 (starts) Remove traits
• 08:51:27.000 (starts) Fixing native nodes...
• 08:51:27.000 (warns) Skipping reindexing. You should reindex soon.
• 08:51:27.000 (infos) importing 988 Pages
• 08:51:26.000 (infos) importing 1000 Pages
• 08:51:26.000 (infos) importing 1000 Pages
• 08:51:26.000 (infos) importing 1000 Pages
• 08:51:26.000 (infos) importing 1000 Pages
• 08:51:25.000 (infos) importing 1000 Pages
• 08:51:25.000 (infos) importing 1000 Pages
• 08:51:25.000 (infos) importing 1000 Pages
• 08:51:25.000 (infos) importing 1000 Pages
• 08:51:24.000 (infos) importing 1000 Pages
• 08:51:24.000 (infos) importing 1000 Pages
• 08:51:24.000 (infos) importing 1000 Pages
• 08:51:24.000 (infos) importing 1000 Pages
• 08:51:24.000 (infos) importing 1000 Pages
• 08:51:23.000 (infos) importing 1000 Pages
• 08:51:23.000 (infos) importing 1000 Pages
• 08:51:23.000 (infos) importing 1000 Pages
• 08:51:23.000 (infos) importing 1000 Pages
• 08:51:22.000 (infos) importing 1000 Pages
• 08:51:22.000 (infos) importing 1000 Pages
• 08:51:22.000 (infos) importing 1000 Pages
• 08:51:22.000 (infos) importing 1000 Pages
• 08:51:21.000 (infos) importing 1000 Pages
• 08:51:21.000 (infos) importing 1000 Pages
• 08:51:21.000 (infos) importing 1000 Pages
• 08:51:21.000 (infos) importing 1000 Pages
• 08:51:20.000 (infos) importing 1000 Pages
• 08:51:20.000 (infos) importing 1000 Pages
• 08:51:20.000 (infos) importing 1000 Pages

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