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Started:
July 29, 2024 10:24
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Completed:
11:37:05
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Failed:
No.
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Status:
completed
Events (most recent first):
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11:32:12
(infos)
++ NUKE: NodeAncestor (0)
fast:135>resource:260,260,260,315,306
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11:32:12
(starts)
Publishing::Fast.by_resource
delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,132
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11:32:12
(starts)
Running
delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,132
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10:56:16
(ends)
Complete
delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,177
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10:56:16
(ends)
TOTAL TIME: 31.7m
delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,176
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10:56:16
(errors)
Manual failure called, process must have died. (Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv)
base:81>delayed_job:21>resource:229>fast:10,172,174
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10:56:16
(warns)
Trait Publishing failed: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv FROM /gems/ruby/3.3.0/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:536:in `merge_triple' << /app/lib/trait_bank/slurp.rb:421:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:421:in `each' << /app/lib/trait_bank/slurp.rb:421:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:297:in `block (2 levels) in load_csv'
delayed_job:21>resource:229>fast:10,160,203,207
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10:56:16
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) FROM: #merge_triple QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1
MATCH (page:Page { page_id: toInteger(row.page_id) })
MATCH (trait:Trait { eol_pk: row.eol_pk })}
slurp:297,421,421,421,535,538
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10:56:16
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1
MATCH (page:Page { page_id: toInteger(row.page_id) })
MATCH (trait:Trait { eol_pk: row.eol_pk })
MERGE (page)-[:trait]->(trait)} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:421,421,421,536,566,574
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10:56:16
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk })
ON CREATE SET trait.resource_pk = row.resource_pk
ON MATCH SET trait.resource_pk = row.resource_pk
ON CREATE SET trait.source = row.source
ON MATCH SET trait.source = row.source
ON CREATE SET trait.literal = row.literal
ON MATCH SET trait.literal = row.literal
ON CREATE SET trait.measurement = row.measurement
ON MATCH SET trait.measurement = row.measurement
ON CREATE SET trait.scientific_name = row.scientific_name
ON MATCH SET trait.scientific_name = row.scientific_name
ON CREATE SET trait.normal_measurement = row.normal_measurement
ON MATCH SET trait.normal_measurement = row.normal_measurement
ON CREATE SET trait.sample_size = row.sample_size
ON MATCH SET trait.sample_size = row.sample_size
ON CREATE SET trait.citation = row.citation
ON MATCH SET trait.citation = row.citation
ON CREATE SET trait.remarks = row.remarks
ON MATCH SET trait.remarks = row.remarks
ON CREATE SET trait.method = row.method
ON MATCH SET trait.method = row.method} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:279,279,282,505,566,574
-
10:56:14
(warns)
...re-trying.
slurp:338,311,279,279,281,290
-
10:51:14
(warns)
FAILED on build_nodes query (Trait), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
slurp:338,311,279,279,281,286
-
10:51:14
(warns)
Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:338,311,279,279,281,285
-
10:51:14
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk })
ON CREATE SET trait.resource_pk = row.resource_pk
ON MATCH SET trait.resource_pk = row.resource_pk
ON CREATE SET trait.source = row.source
ON MATCH SET trait.source = row.source
ON CREATE SET trait.literal = row.literal
ON MATCH SET trait.literal = row.literal
ON CREATE SET trait.measurement = row.measurement
ON MATCH SET trait.measurement = row.measurement
ON CREATE SET trait.scientific_name = row.scientific_name
ON MATCH SET trait.scientific_name = row.scientific_name
ON CREATE SET trait.normal_measurement = row.normal_measurement
ON MATCH SET trait.normal_measurement = row.normal_measurement
ON CREATE SET trait.sample_size = row.sample_size
ON MATCH SET trait.sample_size = row.sample_size
ON CREATE SET trait.citation = row.citation
ON MATCH SET trait.citation = row.citation
ON CREATE SET trait.remarks = row.remarks
ON MATCH SET trait.remarks = row.remarks
ON CREATE SET trait.method = row.method
ON MATCH SET trait.method = row.method} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:279,279,282,505,566,574
-
10:51:14
(warns)
...re-trying.
slurp:338,311,279,279,281,290
-
10:46:14
(warns)
FAILED on build_nodes query (Trait), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
slurp:338,311,279,279,281,286
-
10:46:14
(warns)
Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:338,311,279,279,281,285
-
10:46:14
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk })
ON CREATE SET trait.resource_pk = row.resource_pk
ON MATCH SET trait.resource_pk = row.resource_pk
ON CREATE SET trait.source = row.source
ON MATCH SET trait.source = row.source
ON CREATE SET trait.literal = row.literal
ON MATCH SET trait.literal = row.literal
ON CREATE SET trait.measurement = row.measurement
ON MATCH SET trait.measurement = row.measurement
ON CREATE SET trait.scientific_name = row.scientific_name
ON MATCH SET trait.scientific_name = row.scientific_name
ON CREATE SET trait.normal_measurement = row.normal_measurement
ON MATCH SET trait.normal_measurement = row.normal_measurement
ON CREATE SET trait.sample_size = row.sample_size
ON MATCH SET trait.sample_size = row.sample_size
ON CREATE SET trait.citation = row.citation
ON MATCH SET trait.citation = row.citation
ON CREATE SET trait.remarks = row.remarks
ON MATCH SET trait.remarks = row.remarks
ON CREATE SET trait.method = row.method
ON MATCH SET trait.method = row.method} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:279,279,282,505,566,574
-
10:46:11
(warns)
...re-trying.
slurp:338,311,279,279,281,290
-
10:41:11
(warns)
FAILED on build_nodes query (Trait), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
slurp:338,311,279,279,281,286
-
10:41:11
(warns)
Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:338,311,279,279,281,285
-
10:41:11
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk })
ON CREATE SET trait.resource_pk = row.resource_pk
ON MATCH SET trait.resource_pk = row.resource_pk
ON CREATE SET trait.source = row.source
ON MATCH SET trait.source = row.source
ON CREATE SET trait.literal = row.literal
ON MATCH SET trait.literal = row.literal
ON CREATE SET trait.measurement = row.measurement
ON MATCH SET trait.measurement = row.measurement
ON CREATE SET trait.scientific_name = row.scientific_name
ON MATCH SET trait.scientific_name = row.scientific_name
ON CREATE SET trait.normal_measurement = row.normal_measurement
ON MATCH SET trait.normal_measurement = row.normal_measurement
ON CREATE SET trait.sample_size = row.sample_size
ON MATCH SET trait.sample_size = row.sample_size
ON CREATE SET trait.citation = row.citation
ON MATCH SET trait.citation = row.citation
ON CREATE SET trait.remarks = row.remarks
ON MATCH SET trait.remarks = row.remarks
ON CREATE SET trait.method = row.method
ON MATCH SET trait.method = row.method} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:279,279,282,505,566,574
-
10:41:11
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:279,279,282,505,566,574
-
10:41:11
(warns)
...re-trying.
slurp:338,311,279,279,281,290
-
10:36:11
(warns)
FAILED on build_nodes query (Page), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
slurp:338,311,279,279,281,286
-
10:36:11
(warns)
Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:338,311,279,279,281,285
-
10:36:11
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:279,279,282,505,566,574
-
10:36:08
(warns)
...re-trying.
slurp:338,311,279,279,281,290
-
10:31:08
(warns)
FAILED on build_nodes query (Page), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
slurp:338,311,279,279,281,286
-
10:31:08
(warns)
Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:338,311,279,279,281,285
-
10:31:08
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:279,279,282,505,566,574
-
10:31:06
(warns)
...re-trying.
slurp:338,311,279,279,281,290
-
10:26:06
(warns)
FAILED on build_nodes query (Page), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
slurp:338,311,279,279,281,286
-
10:26:06
(warns)
Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:338,311,279,279,281,285
-
10:26:06
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv
slurp:279,279,282,505,566,574
-
10:26:06
(infos)
Importing 99001 rows from publish_traits_chunk_1.csv
slurp:324>each:9,9>slurp:338,311,276
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10:26:05
(warns)
Found 188411 rows, will break up into 2 of 99000
fast:204,335>slurp:30,586,274,309
-
10:26:05
(infos)
adding new traits
fast:10,160,204,335>slurp:30,585
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10:26:05
(infos)
not removing any traits
fast:10,160,204,335>slurp:29,614
-
10:26:03
(infos)
polling for trait diff metadata: /resources/1222/publish_diffs.json
fast:204,335>slurp:20>content_server_connection:38,156,83
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10:26:03
(starts)
#publish_traits = TraitBank::Slurp.load_resource_from_repo
base:81>delayed_job:21>resource:229>fast:10,160,202
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10:26:03
(starts)
Fixing native nodes...
base:81>delayed_job:21>resource:229>fast:10,155>page_creator:39
-
10:26:03
(warns)
Skipping reindexing. You should reindex soon.
base:81>delayed_job:21>resource:229>fast:10,155>page_creator:32
-
10:26:03
(infos)
importing 196 Pages
fast:155>page_creator:25>grouping:39,39,39>page_creator:26
-
10:26:03
(infos)
importing 1000 Pages
page_creator:25>grouping:39,39,39,39>page_creator:26
-
10:26:02
(infos)
importing 1000 Pages
page_creator:25>grouping:39,39,39,39>page_creator:26
-
10:26:02
(infos)
importing 1000 Pages
page_creator:25>grouping:39,39,39,39>page_creator:26
-
10:26:02
(infos)
importing 1000 Pages
page_creator:25>grouping:39,39,39,39>page_creator:26
-
10:26:02
(infos)
importing 1000 Pages
page_creator:25>grouping:39,39,39,39>page_creator:26
-
10:26:02
(infos)
importing 1000 Pages
page_creator:25>grouping:39,39,39,39>page_creator:26