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Started:
February 10, 2022 09:01
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Completed:
10:17:12
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Failed:
No.
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Status:
completed
Events (most recent first):
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10:17:12
(ends)
Complete
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10:17:12
(ends)
TOTAL TIME: 76.1m
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10:17:12
(starts)
TraitBank::Denormalizer.update_resource_vernaculars
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10:17:12
(starts)
Running
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10:17:07
(starts)
Resource#fix_native_nodes
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10:17:07
(starts)
Running
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10:17:07
(warns)
Trait Publishing failed: At https://eol.org/data/tdfidbdt/publish_metadata_chunk_6.csv @ position 20910899 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Davis,W.J. ",,,,,,,,false
OccurrenceMetadatum-51255764,R1091-PK254237330,http://rs.tdwg.org/dwc/terms/identifiedBy,"DD' FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:560:in `merge_triple' << /app/lib/trait_bank/slurp.rb:447:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:447:in `each' << /app/lib/trait_bank/slurp.rb:447:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:331:in `block (2 levels) in load_csv'
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10:16:52
(warns)
FAILED on build_nodes query (MetaData), will re-try once...
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10:16:52
(warns)
At https://eol.org/data/tdfidbdt/publish_metadata_chunk_6.csv @ position 20910899 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Davis,W.J. ",,,,,,,,false
OccurrenceMetadatum-51255764,R1091-PK254237330,http://rs.tdwg.org/dwc/terms/identifiedBy,"DD'
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10:16:39
(infos)
Importing 250000 rows from publish_metadata_chunk_6.csv
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10:01:39
(infos)
Waiting 900 seconds for the last 'chunk' to be added to neo4j...
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10:00:19
(infos)
Importing 250000 rows from publish_metadata_chunk_5.csv
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09:47:49
(infos)
Waiting 750 seconds for the last 'chunk' to be added to neo4j...
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09:46:45
(infos)
Importing 250000 rows from publish_metadata_chunk_4.csv
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09:36:44
(infos)
Waiting 600 seconds for the last 'chunk' to be added to neo4j...
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09:35:26
(infos)
Importing 250000 rows from publish_metadata_chunk_3.csv
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09:27:56
(infos)
Waiting 450 seconds for the last 'chunk' to be added to neo4j...
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09:26:45
(warns)
FAILED on build_nodes query (MetaData), will re-try once...
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09:26:45
(warns)
The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout.
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09:25:23
(infos)
Importing 250000 rows from publish_metadata_chunk_2.csv
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09:20:22
(infos)
Waiting 300 seconds for the last 'chunk' to be added to neo4j...
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09:19:06
(infos)
Importing 250000 rows from publish_metadata_chunk_1.csv
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09:19:06
(warns)
Found 6630120 rows, will break up into 250000
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09:19:06
(infos)
adding new metadata
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09:17:19
(infos)
Importing 250000 rows from publish_traits_chunk_2.csv
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09:14:43
(infos)
Importing 250000 rows from publish_traits_chunk_1.csv
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09:14:43
(warns)
Found 475231 rows, will break up into 250000
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09:14:43
(infos)
adding new traits
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09:09:27
(infos)
removing all traits
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09:09:14
(infos)
polling for trait diff metadata: /resources/1091/publish_diffs.json
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09:09:14
(starts)
#publish_traits = TraitBank::Slurp.load_resource_from_repo
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09:09:14
(starts)
Running
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09:09:13
(starts)
Fixing native nodes...
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09:09:13
(warns)
Skipping reindexing. You should reindex soon.
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09:09:13
(infos)
importing 436 Pages
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09:09:12
(infos)
importing 1000 Pages
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09:09:12
(infos)
importing 1000 Pages
-
09:09:12
(infos)
importing 1000 Pages
-
09:09:12
(infos)
importing 1000 Pages
-
09:09:11
(infos)
importing 1000 Pages
-
09:09:11
(infos)
importing 1000 Pages
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09:09:11
(infos)
importing 1000 Pages
-
09:09:11
(infos)
importing 1000 Pages
-
09:09:10
(infos)
importing 1000 Pages
-
09:09:10
(infos)
importing 1000 Pages
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09:09:10
(infos)
importing 1000 Pages
-
09:09:09
(infos)
importing 1000 Pages
-
09:09:09
(infos)
importing 1000 Pages
-
09:09:08
(infos)
importing 1000 Pages
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09:09:08
(infos)
importing 1000 Pages
