Importer le journal pour Polytraits

Started: August 09, 2023 12:14
Completed: 12:15:42
Failed: No.
Status: completed

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12:15:42 (ends) Complete
12:15:42 (ends) TOTAL TIME: 51.356978143s
12:15:42 (starts) TraitBank::Denormalizer.update_resource_vernaculars
12:15:42 (starts) Running
12:15:42 (starts) Resource#fix_native_nodes
12:15:42 (starts) Running
12:15:42 (warns) Trait Publishing failed: At https://eol.org/data/polytraits/publish_traits.tsv @ position 818414 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'p. 665:\"TT' FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:559:in `merge_triple' << /app/lib/trait_bank/slurp.rb:444:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:444:in `each' << /app/lib/trait_bank/slurp.rb:444:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:331:in `block (2 levels) in load_csv'
12:15:42 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) FROM: #merge_triple QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_traits.tsv' AS row WITH row WHERE 1=1 MATCH (page:Page { page_id: toInteger(row.page_id) }) MATCH (trait:Trait { eol_pk: row.eol_pk })}
12:15:42 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_traits.tsv' AS row WITH row WHERE 1=1 MATCH (page:Page { page_id: toInteger(row.page_id) }) MATCH (trait:Trait { eol_pk: row.eol_pk }) MERGE (page)-[:trait]->(trait)} MESSAGE: At https://eol.org/data/polytraits/publish_traits.tsv @ position 818414 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'p. 665:\"TT'
12:15:42 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_traits.tsv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk }) ON CREATE SET trait.resource_pk = row.resource_pk ON MATCH SET trait.resource_pk = row.resource_pk ON CREATE SET trait.source = row.source ON MATCH SET trait.source = row.source ON CREATE SET trait.literal = row.literal ON MATCH SET trait.literal = row.literal ON CREATE SET trait.measurement = row.measurement ON MATCH SET trait.measurement = row.measurement ON CREATE SET trait.scientific_name = row.scientific_name ON MATCH SET trait.scientific_name = row.scientific_name ON CREATE SET trait.normal_measurement = row.normal_measurement ON MATCH SET trait.normal_measurement = row.normal_measurement ON CREATE SET trait.sample_size = row.sample_size ON MATCH SET trait.sample_size = row.sample_size ON CREATE SET trait.citation = row.citation ON MATCH SET trait.citation = row.citation ON CREATE SET trait.remarks = row.remarks ON MATCH SET trait.remarks = row.remarks ON CREATE SET trait.method = row.method ON MATCH SET trait.method = row.method} MESSAGE: At https://eol.org/data/polytraits/publish_traits.tsv @ position 818414 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'p. 665:\"TT'
12:15:41 (warns) FAILED on build_nodes query (Trait), will re-try once...
12:15:41 (warns) At https://eol.org/data/polytraits/publish_traits.tsv @ position 818414 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'p. 665:\"TT'
12:15:41 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_traits.tsv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk }) ON CREATE SET trait.resource_pk = row.resource_pk ON MATCH SET trait.resource_pk = row.resource_pk ON CREATE SET trait.source = row.source ON MATCH SET trait.source = row.source ON CREATE SET trait.literal = row.literal ON MATCH SET trait.literal = row.literal ON CREATE SET trait.measurement = row.measurement ON MATCH SET trait.measurement = row.measurement ON CREATE SET trait.scientific_name = row.scientific_name ON MATCH SET trait.scientific_name = row.scientific_name ON CREATE SET trait.normal_measurement = row.normal_measurement ON MATCH SET trait.normal_measurement = row.normal_measurement ON CREATE SET trait.sample_size = row.sample_size ON MATCH SET trait.sample_size = row.sample_size ON CREATE SET trait.citation = row.citation ON MATCH SET trait.citation = row.citation ON CREATE SET trait.remarks = row.remarks ON MATCH SET trait.remarks = row.remarks ON CREATE SET trait.method = row.method ON MATCH SET trait.method = row.method} MESSAGE: At https://eol.org/data/polytraits/publish_traits.tsv @ position 818414 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'p. 665:\"TT'
12:15:39 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_traits.tsv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: At https://eol.org/data/polytraits/publish_traits.tsv @ position 818414 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'p. 665:\"TT'
12:15:39 (warns) FAILED on build_nodes query (Page), will re-try once...
12:15:39 (warns) At https://eol.org/data/polytraits/publish_traits.tsv @ position 818414 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'p. 665:\"TT'
12:15:39 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_traits.tsv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: At https://eol.org/data/polytraits/publish_traits.tsv @ position 818414 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'p. 665:\"TT'
12:15:37 (infos) Importing 128000 rows from publish_traits.tsv
12:15:37 (infos) adding new traits
12:15:15 (infos) removing all traits
12:15:13 (infos) Connecting to https://content.eol.org/ ...
12:15:13 (infos) Connecting to https://content.eol.org/ ...
12:15:12 (infos) polling for trait diff metadata: /resources/53/publish_diffs.json
12:15:12 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
12:15:12 (starts) Running
12:15:12 (starts) Fixing native nodes...
12:15:12 (warns) Skipping reindexing. You should reindex soon.
12:15:12 (infos) importing 55 Pages
12:15:09 (starts) create_new_pages
12:15:09 (starts) PageCreator
12:15:09 (starts) Running
12:15:09 (starts) restoring vernacular preferences...
12:15:09 (starts) Running
12:15:09 (warns) MISSING https://content.eol.org/data/polytraits/publish_content_sections.tsv [404] (8 bytes); skipping
12:15:09 (infos) Connecting to https://content.eol.org/ ...
12:15:09 (starts) #grab_file content_sections.tsv
12:15:09 (starts) Running
12:15:09 (starts) #import_and_prop_ids ContentSection
12:15:09 (starts) Running
12:15:09 (warns) MISSING https://content.eol.org/data/polytraits/publish_references.tsv [404] (8 bytes); skipping
12:15:08 (infos) Connecting to https://content.eol.org/ ...
12:15:08 (starts) #grab_file references.tsv
12:15:08 (starts) Running
12:15:07 (starts) #import_and_prop_ids Reference
12:15:07 (starts) Running
12:15:07 (warns) MISSING https://content.eol.org/data/polytraits/publish_image_info.tsv [404] (8 bytes); skipping
12:15:07 (infos) Connecting to https://content.eol.org/ ...
12:15:07 (starts) #grab_file image_info.tsv
12:15:07 (starts) Running
12:15:07 (starts) #import_and_prop_ids ImageInfo

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