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Acidobacteria

Acidobacteria ( allemand )

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Die Gruppe der Acidobakterien (alias Acidobacteriota) bildet innerhalb der Bakterien ein eigenständiges Phylum. Sie sind also weder mit den Proteobakterien, Firmicutes oder anderen Bakteriengruppen verwandt.

Der namengebende Organismus für dieses Phylum, Acidobacterium capsulatum, wurde erstmals 1991 aus sauren Bergwerksabwässern in Japan isoliert[2] (lat. acidus: „sauer“) und seine Besonderheit in der phylogenetischen Stellung erkannt[3]. Weitere Bakterienarten, welche ebenfalls zu den Acidobacteria gezählt werden, sind Holophaga foetida[4], Geothrix fermentans[5], Terriglobus roseus[6], Granulicella paludicola, G. pectinivorans, G. aggregans, G. rosea[7], Edaphobacter modestus, E. aggregans[8], Acanthopleuribacter pedis[9] und Chloracidobacterium thermophilum[10]. Neben diesen Organismen lassen sich in der wissenschaftlichen Literatur Hinweise darauf finden, dass noch weitere Isolate vorliegen, welche bisher aber nicht weiter beschrieben sind.

Der bisher geringen Anzahl an isolierten Vertretern der Acidobakterien unter Laborbedingungen steht eine große Anzahl an 16S rDNA-Sequenzen gegenüber. Im Jahr 2007 umfassten die öffentlichen Gendatenbanken über 3000 unterschiedliche Acidobakterium-Sequenzen. Ergebnisse von ersten Untersuchungen zur Phylogenie der Acidobakterien ergaben noch vier bis fünf Untergruppen innerhalb des Phylums[11][12]. Mit wachsender Anzahl an Sequenzen[13][14] aus den unterschiedlichsten Ökosystemen wird seitdem von mindestens 26 Untergruppen ausgegangen[15]. Insgesamt ist das Phylum in seiner phylogenetischen Variabilität vergleichbar mit dem Phylum der Proteobakterien[16].

Vorkommen

Acidobakterien wurden bisher in einer Vielzahl von unterschiedlichen Ökosystemen nachgewiesen. In Böden stellen sie dabei oftmals den Hauptanteil der Bakterien. So lag bei molekularbiologischen Untersuchungen von Böden in Arizona der Anteil von Acidobakterien an der gesamten Bakterienpopulation bei 50 %[17] und in alpinen Böden bei ca. 40 %[18]. Aus Boden-, Wasser- und Sedimentproben isolierte DNA-Fragmente zeigen, dass Acidobakterien weit verbreitet sind. Acidobakterien sind daher wahrscheinlich außerordentlich divers und spielen beim mikrobiell vermittelten Stoffumsatz in der Natur eine wichtige Rolle.

Stoffwechsel

Die große phylogenetische Varianz der Acidobakterien, die vergleichbar mit der der Proteobakterien ist, lässt auf eine ebenso große Variabilität im Stoffwechsel schließen. Bisher liegen zwar nur wenige Acidobakterien in Kultur mit einer größeren Anzahl an Daten zum Metabolismus vor, dennoch scheint sich anhand dieser wenigen Daten die vermutete große Variabilität der Acidobakterien zu bestätigen. Acidobacterium capsulatum wächst langsam und bei geringen Nährstoffkonzentrationen, er bevorzugt oligotrophe Bedingungen. Neuere Untersuchungen weisen darauf hin, dass zumindest einige Acidobakterien auch methylotroph leben können[19].

Systematik

Die folgende Liste folgt LPSN (mit Stand vom 22. Oktober 2020),[20] der Name des Phylums selbst ist nach dieser Quelle noch vorläufig. Es ist nur eine auswahlvon Gattungen und Spezies beispielhaft angegeben:

  • Gattung Acidicapsa Kulichevskaya et al. 2012
  • Gattung Acidipila Okamura et al. 2015
  • Gattung Acidisarcina Belova et al. 2018
  • Gattung Acidobacterium Kishimoto et al. 1991
  • Gattung Bryocella Dedysh et al. 2012
  • Gattung Chloracidobacterium Tank und Bryant 2015
  • Gattung Edaphobacter Koch et al. 2008
  • Gattung Granulicella Pankratov und Dedysh 2010
  • Gattung Occallatibacter Foesel et al. 2016
  • Gattung Silvibacterium Lladó et al. 2016
  • Gattung Telmatobacter Pankratov et al. 2012
  • Gattung Terracidiphilus García-Fraile et al. 2016
  • Gattung Terriglobus Eichorst et al. 2007

Einzelnachweise

  1. a b A. L. Baker: PhycoKey: Acidobacteria (Chemo-, Photosynthetic Bacteria), University of New Hampshire
  2. N. Kishimoto, Y. Kosako, T. Tano: Acidobacterium capsulatum gen. nov., sp. nov.: an acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment. Curr Microbiol 22: S. 1-7 (1991).
  3. A. Hiraishi, N. Kishimoto, Y. Kosako, N. Wakao, T. Tano: Phylogenetic position of the menaquinone-containing acidophilic chemo-organotroph Acidobacterium capsulatum. FEMS Microbiol Lett 132, S. 91–94 (1995).
  4. F. Bak, K. Finster and F. Rotfuß. Formation of dimethylsulfide and methanethiol from methoxylated aromatic compounds and inorganic sulfide by newly isolated anaerobic bacteria. Arch Microbiol 157: S, 529-534 (1992)
  5. J. D. Coates, D. J. Ellis, C. V. Gaw, D. R. Lovley: Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. International Journal of Systematic and Evolutionary Microbiology, 49: S. 1615–1622, 1999.
  6. S. A. Eichorst, J. A. Breznak, T. M. Schmidt: Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol 73: S. 2708-2717 (2007).
  7. I. S. Kulichevskaya, N. E. Suzina, W. Liesack, S. N. Dedysh: Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria. Int J Syst Evol Microbiol 60: S. 301–306 (2010)
  8. I. H. Koch, F. Gich, P. F. Dunfield, J. Overmann: Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils. Int J Syst Evol Microbiol 58: S. 1114–1122 (2008)
  9. Y. Fukunaga, M. Kurahashi, K. Yanagi, A. Yokota, S. Harayama: Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum ‘Acidobacteria’. Int J Syst Evol Microbiol 58: S. 2597-2601 (2008).
  10. D. A. Bryant, A. M. G. Costas, J. A. Maresca, A. G. M. Chew, C. G. Klatt, M. M. Bateson, L. J. Tallon, J. Hostetler, W. C. Nelson, J. F. Heidelberg, D. M. Ward: Candidatus Chloracidobacterium thermophilum: An aerobic phototrophic acidobacterium. Science, 317:523–526 (2007).
  11. C. R. Kuske, S. M. Barns, J. D. Busch: Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614–3621 (1997).
  12. W. Ludwig, S. H. Bauer, M. Bauer, I. Held, G. Kirchhof, R. Schulze, I. Huber, S. Spring, A. Hartmann, K. H. Schleifer: Detection and in situ identification of representatives of a widely distributed new bacterial phylum. FEMS Microbiol. Lett. 153:181–190 (1997).
  13. P. Hugenholtz, B. M. Goebel, N. R. Pace: Impact of cultureindependent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180: S. 4765–4774 (1998).
  14. J. Zimmermann, J. M. Gonzalez, C. Saiz-Jimenez, W. Ludwig: Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira Cave using 23S rRNA sequence analysis. Geomicrobiol. J. 22: S. 379–388 (2005).
  15. S. M. Barns, E. C. Cain, L. Sommerville, C. R. Kuske: Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum. Appl. Environ. Microbiol., 73(9): S. 3113–3116 (2007).
  16. P. Hugenholtz et al.: Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity. In: J. Bact. 180 (18), S. 4765–4774 (1998)
  17. J. Dunbar, S. M. Barns, L. O. Ticknor, and C. R. Kuske. Empirical and theoretical bacterial diversity in four Arizona soils. Appl. Environ. Microbiol. 68:3035–3045 (2002).
  18. D. A. Lipson, and S. K. Schmidt. Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains. Appl. Environ. Microbiol. 70:2867–2879 (2004).
  19. S. Radajewski, P. Ineson, N. R. Parekh and J. Colin Murrell. Stable-isotope probing as a tool in microbial ecology. Nature 403, 646–649 (2000).
  20. LPSN: Phylum "Acidobacteria"
  21. NCBI: Acidobacteria bacterium RB41 (species)
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Acidobacteria: Brief Summary ( allemand )

fourni par wikipedia DE

Die Gruppe der Acidobakterien (alias Acidobacteriota) bildet innerhalb der Bakterien ein eigenständiges Phylum. Sie sind also weder mit den Proteobakterien, Firmicutes oder anderen Bakteriengruppen verwandt.

Der namengebende Organismus für dieses Phylum, Acidobacterium capsulatum, wurde erstmals 1991 aus sauren Bergwerksabwässern in Japan isoliert (lat. acidus: „sauer“) und seine Besonderheit in der phylogenetischen Stellung erkannt. Weitere Bakterienarten, welche ebenfalls zu den Acidobacteria gezählt werden, sind Holophaga foetida, Geothrix fermentans, Terriglobus roseus, Granulicella paludicola, G. pectinivorans, G. aggregans, G. rosea, Edaphobacter modestus, E. aggregans, Acanthopleuribacter pedis und Chloracidobacterium thermophilum. Neben diesen Organismen lassen sich in der wissenschaftlichen Literatur Hinweise darauf finden, dass noch weitere Isolate vorliegen, welche bisher aber nicht weiter beschrieben sind.

Der bisher geringen Anzahl an isolierten Vertretern der Acidobakterien unter Laborbedingungen steht eine große Anzahl an 16S rDNA-Sequenzen gegenüber. Im Jahr 2007 umfassten die öffentlichen Gendatenbanken über 3000 unterschiedliche Acidobakterium-Sequenzen. Ergebnisse von ersten Untersuchungen zur Phylogenie der Acidobakterien ergaben noch vier bis fünf Untergruppen innerhalb des Phylums. Mit wachsender Anzahl an Sequenzen aus den unterschiedlichsten Ökosystemen wird seitdem von mindestens 26 Untergruppen ausgegangen. Insgesamt ist das Phylum in seiner phylogenetischen Variabilität vergleichbar mit dem Phylum der Proteobakterien.

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Acidobacteria ( tagalog )

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Ang acidobacteria ay isang uri ng phylum sa bakterya kahariang Protista. Hindi malaman kung saan ito maikakategorya, sa Gram-positive bacteria o Gram-negative bacteria.


Bakterya Ang lathalaing ito na tungkol sa Bakterya ay isang usbong. Makatutulong ka sa Wikipedia sa nito.

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Acidobacteria ( macédonien )

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Acidobacteria е колено на бактерии. Неговите членови се доста разновидни во поглед на физиологијата, широко се распространети во природата (особено во почвите), но не се доволно застапени во културите.[2][3][4]

Опис

Членовите на ова колено се физиолошки разноврсни, и може да се најдат во различни природни средини, вклучувајки ги почвите, изворите на топла вода, морињата, пештерите, итн.[5] Многу Acidobacteria се ацидофилни бактерии, вклучувајќи го и првиот опишан вид, Acidobacterium capsulatum.[6]

Други познати видови се Holophaga foetida,[7] Geothrix fermentans,[8] Acanthopleuribacter pedis[9] и Bryobacter aggregatus.[10] Бидејќи неодамна се откриени и сѐ уште не се култивирани, екологијата и метаболизмот на овие бактерии останува неразјаснет. Сепак, овие бактерии можеби играат значајна улога во екосистемите бидејќи посебно се застапени во почвите.[11]

Некласифицираната подгрупа 2 ацидобактерии исто така се идентификувани како контаминенти во комплементите на реагенси за екстракција на ДНК, што може да доведе до погрешни толкувања за нивната присутност во микробиотата или во метагеномските податоци.[12]

Историја

Првиот вид на ова колено, Acidobacterium capsulatum, бил откриен во 1991 година.[13] Сепак, Acidobacteria не бил признаен како нов таксон сѐ до 1997 година, и не бил признат како посебно колено на бактерии сѐ до 2012 година.[14]

Филогенија

Моментално прифатената таксономија е врз основа на Листата на имиња на прокариотите со евиденција во номенклатурата (анг. List of Prokaryotic names with Standing in Nomenclature - LPSN)[15][16], а филогенијата е базирана на 16S рРНК секвенционирање на LTP 123 од Проектот "Животно дрво на сите видови" (анг. The All-Species Living Tree Project).[17]


Holophagae Acanthopleuribacteraceae

Acanthopleuribacter pedis Fukunaga et al. 2008


Holophagaceae

Geothrix fermentans Coates et al. 1999



Holophaga foetida Liesack et al. 1995





"Solibacteres"

Bryobacter aggregatus Kulichevskaya et al. 2010



Paludibaculum fermentans Kulichevskaya et al. 2014



Acidobacteriaceae

Acidobacterium capsulatum Kishimoto et al. 1991




Telmatobacter bradus Pankratov and Dedysh 2012


Acidicapsa

A. borealis Kulichevskaya et al. 2012 (type sp.)



A. ligni Kulichevskaya et al. 2012








Bryocella elongata Dedysh et al. 2012


Edaphobacter

E. aggregans Koch et al. 2008 emend. Dedysh et al. 2012



E. modestus Koch et al. 2008 (type sp.)






"Granulicella" mallensis Männistö et al. 2012



Terriglobus

T. aquaticus Baik et al. 2013




T. roseus Eichorst et al. 2007 (type sp.)




T. saanensis Männistö et al. 2011



T. tenax Whang et al. 2014





Granulicella

G. cerasi Yamada et al. 2014



G. paludicola Pankratov and Dedysh 2010 (type sp.)





G. pectinivorans Pankratov and Dedysh 2010




G. sapmiensis Männistö et al. 2012




G. aggregans Pankratov and Dedysh 2010




G. tundricola Männistö et al. 2012




G. arctica Männistö et al. 2012



G. rosea Pankratov and Dedysh 2010














Забелешки:

♠ Видови кои се регистрирани во Националниот центар за биотехнолошки информации (анг. National Center for Biotechnology Information - NCBI), но не се во Листата на имиња на прокариотите со евиденција во номенклатурата (анг. List of Prokaryotic names with Standing in Nomenclature - LPSN).

Наводи

  1. Validation List no. 143. „Int. J. Syst. Evol. Microbiol.“ том 62: 1–4.
  2. Barns SM; Cain EC; Sommerville L; Kuske CR (2007 г). Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum. „Appl. Environ. Microbiol.“ том 73 (9): 3113–6. doi:10.1128/AEM.02012-06. PMID 17337544.
  3. Quaiser A; Ochsenreiter T; Lanz C (2003 г). Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics. „Mol. Microbiol.“ том 50 (2): 563–75. doi:10.1046/j.1365-2958.2003.03707.x. PMID 14617179.
  4. Rappe, M. S.; Giovannoni, S. J. (2003 г). The Uncultured Microbial Majority. „Annual Review of Microbiology“ том 57: 369–394. doi:10.1146/annurev.micro.57.030502.090759. PMID 14527284.
  5. Whitman WB, уред (2015). „Acidobacteria phyl. nov.“. Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons. doi:10.1002/9781118960608.pbm00001.
  6. Kuske CR; Barns SM; Busch JD (1 септември 1997 г). Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. „Appl. Environ. Microbiol.“ том 63 (9): 3614–21. PMID 9293013.
  7. Liesack, Werner; Bak, Friedhelm; Kreft, Jan-Ulrich; Stackebrandt, E. (30 јуни 1994 г). Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds. „Archives of Microbiology“ том 162 (1–2): 85–90. doi:10.1007/BF00264378. PMID 8085918.
  8. Coates, J. D.; Ellis, D. J.; Gaw, C. V.; Lovley, D. R. (1 октомври 1999 г). Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. „International Journal of Systematic Bacteriology“ том 49 (4): 1615–1622. doi:10.1099/00207713-49-4-1615. PMID 10555343.
  9. Fukunaga, Y; Kurahashi, M; Yanagi, K; Yokota, A; Harayama, S (ноември 2008 г). Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'. „International Journal of Systematic and Evolutionary Microbiology“ том 58 (Pt 11): 2597–2601. doi:10.1099/ijs.0.65589-0. PMID 18984699.
  10. Kulichevskaya, IS; Suzina, NE; Liesack, W; Dedysh, SN (февруари 2010 г). Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria. „International Journal of Systematic and Evolutionary Microbiology“ том 60 (Pt 2): 301–6. doi:10.1099/ijs.0.013250-0. PMID 19651730.
  11. Eichorst SA; Breznak JA; Schmidt TM (2007 г). Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. „Appl. Environ. Microbiol.“ том 73 (8): 2708–17. doi:10.1128/AEM.02140-06. PMID 17293520.
  12. Salter, Susannah J.; Cox, Michael J.; Turek, Elena M.; Calus, Szymon T.; Cookson, William O.; Moffatt, Miriam F.; Turner, Paul; Parkhill, Julian; и др. (1 јануари 2014 г). Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. „BMC Biology“ том 12: 87. doi:10.1186/s12915-014-0087-z. ISSN 1741-7007. PMID 25387460. PMC: 4228153. https://dx.doi.org/10.1186/s12915-014-0087-z.
  13. Kishimoto, Noriaki; Kosako, Yoshimasa; Tano, Tatsuo (31 декември 1990 г). Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment. „Current Microbiology“ том 22 (1): 1–7. doi:10.1007/BF02106205.
  14. Euzeby JP. „Taxa above the rank of class - Acidobacteria“. конс. 26 November 2017.
  15. See the List of Prokaryotic names with Standing in Nomenclature. Data extracted from J.P. Euzéby. „Acidobacteria“. Архивирано од изворникот на 2013-01-27. конс. 2016-09-09.
  16. See the NCBI webpage on Chlorobi Data extracted from Sayers и др. „NCBI Taxonomy Browser“. National Center for Biotechnology Information. конс. 2016-09-09.
  17. See the All-Species Living Tree Project [1]. Data extracted from the „16S rRNA-based LTP release 123 (full tree)“ (PDF). Silva Comprehensive Ribosomal RNA Database. конс. 2016-09-09.

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Acidobacteria: Brief Summary ( macédonien )

fourni par wikipedia emerging languages

Acidobacteria е колено на бактерии. Неговите членови се доста разновидни во поглед на физиологијата, широко се распространети во природата (особено во почвите), но не се доволно застапени во културите.

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ऐसिडोबैक्टीरिया ( hindi )

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ऐसिडोबैक्टीरिया (Acidobacteria) बैक्टीरिया का एक बड़ा और विविध जीववैज्ञानिक संघ है। इसकी सदस्य जातियाँ पृथ्वी-भर पर फैली हुई हैं, और मिट्टी, गरम चश्मों, सागरोंमहासागरों, गुफ़ाओं, और धातु-प्रदूषित स्थानों में मिलती हैं। कई जातियाँ अम्लपसंदी हैं, जिसके आधार पर संघ का नाम पड़ा है ("ऐसिड" अम्ल का अंग्रेज़ी शब्द है)।[1][2][3]

इन्हें भी देखें

सन्दर्भ

  1. Barns SM; Cain EC; Sommerville L; Kuske CR (2007). "Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum". Appl. Environ. Microbiol. 73 (9): 3113–6. PMC 1892891. PMID 17337544. डीओआइ:10.1128/AEM.02012-06.
  2. Quaiser A; Ochsenreiter T; Lanz C (2003). "Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics". Mol. Microbiol. 50 (2): 563–75. PMID 14617179. डीओआइ:10.1046/j.1365-2958.2003.03707.x.
  3. Rappe, MS; Giovannoni, SJ (2003). "The Uncultured Microbial Majority". Annual Review of Microbiology. 57: 369–394. PMID 14527284. डीओआइ:10.1146/annurev.micro.57.030502.090759.
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ऐसिडोबैक्टीरिया: Brief Summary ( hindi )

fourni par wikipedia emerging languages

ऐसिडोबैक्टीरिया (Acidobacteria) बैक्टीरिया का एक बड़ा और विविध जीववैज्ञानिक संघ है। इसकी सदस्य जातियाँ पृथ्वी-भर पर फैली हुई हैं, और मिट्टी, गरम चश्मों, सागरोंमहासागरों, गुफ़ाओं, और धातु-प्रदूषित स्थानों में मिलती हैं। कई जातियाँ अम्लपसंदी हैं, जिसके आधार पर संघ का नाम पड़ा है ("ऐसिड" अम्ल का अंग्रेज़ी शब्द है)।

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Acidobacteriota ( anglais )

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Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.[4][5][6]

Description

Members of this phylum are physiologically diverse, and can be found in a variety of environments including soil, decomposing wood,[7] hot springs, oceans, caves, and metal-contaminated soils.[8] The members of this phylum are particularly abundant in soil habitats representing up to 52% of the total bacterial community.[9] Environmental factors such as pH and nutrients have been seen to drive Acidobacteriota dynamics.[10][11][12] Many Acidobacteriota are acidophilic, including the first described member of the phylum, Acidobacterium capsulatum.[13]

There is much that is unknown about Acidobacteria both in their form and function. Thus, this is a growing field of microbiology. Some of this uncertainty can be attributed to the difficulty with which these bacteria are grown in the laboratory. There has been recent success in propagation by using low concentrations of nutrients in combination with high amounts of CO2,[10] yet, progress is still quite slow. These new methods have only allowed approximately 30% of subdivisions to have species documented.[10]

Additionally, many of the samples sequenced do not have taxonomic names as they have not yet been fully characterized. This area of study is a very current topic, and scientific understanding is expected to grow and change as new information comes to light.

Other notable species are Holophaga foetida,[14] Geothrix fermentans,[15] Acanthopleuribacter pedis[16] and Bryobacter aggregatus.[17] Since they have only recently been discovered and the large majority have not been cultured, the ecology and metabolism of these bacteria is not well understood.[5] However, these bacteria may be an important contributor to ecosystems, since they are particularly abundant within soils.[18] Members of subdivisions 1, 4, and 6 are found to be particularly abundant in soils.[19]

As well as their natural soil habitat, unclassified subdivision 2 Acidobacteriota have also been identified as a contaminant of DNA extraction kit reagents, which may lead to their erroneous appearance in microbiota or metagenomic datasets.[20]

Members of subdivision 1 have been found to dominate in low pH conditions.[21][10] Additionally, Acidobacteriota from acid mine drainage have been found to be more adapted to acidic pH conditions (pH 2-3) compared to Acidobacteriota from soils,[22] potentially due to cell specialization and enzyme stability.[10]

The G+C content of Acidobacteria genomes are consistent within their subdivisions - above 60% for group V fragments and roughly 10% lower for group III fragments.[5]

The majority of Acidobacteriota are considered aerobes.[23][24] There are some Acidobacteriota that are considered anaerobes within subdivision 8[15] and subdivision 23.[25] It has been found that some strains of Acidobacteriota originating from soils have the genomic potential to respire oxygen at atmospheric and sub-atmospheric concentrations.[24]

Members of the Acidobacteriota phylum have been considered oligotrophic bacteria due to high abundances in low organic carbon environments.[10] However, the variation in this phylum may indicate that they may not have the same ecological strategy.[10]

History

The first species, Acidobacterium capsulatum, of this phylum was discovered in 1991.[26] However, Acidobacteriota were not recognized as a distinct clade until 1997,[13] and were not recognized as a phylum until 2012.[27] First genome was sequenced in 2006.[28]

Subdivisions

In an effort to further classify Acidobacteria, 16S rRNA gene regions were sequenced from many different strains. These sequences lead to the formation of subdivisions within the phyla. Today, there are 26 accepted subdivisions recognized in the Ribosomal Database Project.[10]

Much of this variety comes from populations of acidobacteria found in soils contaminated with uranium. Therefore, most of the known species in this phyla are concentrated in a few of the subdivisions, the largest being #1. Most of these microbes are aerobes, and they are all heterotrophic. Subdivision 1 contains 11 of the known genera in addition to the majority of the species that have been able to be cultivated thus far.[10]

Within the 22 known genera, there are 40 conclusive species. The genera are divided amongst subdivisions 3, 4, 8, 10, 23, and 1. As the Acidobateria are a developing area of microbiology, it is hypothesized that these numbers will change drastically with further study.[10]

Metabolism

Carbon

Some members of subdivision 1 are able to use D-glucose, D-xylose, and lactose as carbon sources,[10] but are unable to use fucose or sorbose.[29] Members of subdivision 1 also contain enzymes such as galactosidases used in the breakdown of sugars.[10] Members of subdivision 4 have been found to use chitin as a carbon source.[30][31][10]

Despite the presence of genetic information generally known to encode for carbohydrate processing machinery in various genera of Acidobacteria, several experimental studies have demonstrated the inability to break down various polysaccharides.[10]

Cellulose is the main component of plant cell walls and a seemingly opportune resource for carbon. However, only a single species across all subdivisions has been shown to process it, Telmactobacter bradus from subvision 1. Scientists note that it is much too early in their understanding of the field to draw conclusions about carbon processing in Acidobacteria, but believe that xylan degradation (a polysaccharide primarily found in the secondary cell wall of plants) currently appears to be the most universal carbon breakdown ability.[10]

Researchers believe that an additional factor in the lack of understanding of carbon degradation by acidobacteria may stem from the present limited ability to provide adequate cultivation conditions.[10] To study the natural behavior of these bacteria, they must grow and live in a controlled, observable environment. If such a habitat cannot be provided, recorded data cannot reliably report on the activity of the microbes in question. Therefore, the inconsistencies between genome sequence based predictions and observed carbon processes may be explained by present study methods.

Nitrogen

There has been no clear evidence that Acidobacteriota are involved in nitrogen-cycle processes such as nitrification, denitrification, or nitrogen fixation.[10] However, Geothrix fermantans was shown to be able to reduce nitrate and contained the norB gene.[10] The NorB gene was also identified in Koribacter verstailis and Solibacter usitatus.[32][10] In addition, the presence of the nirA gene has been observed in members of subdivision 1.[10] Additionally, to date, all genomes have been described to directly uptake ammonium via ammonium channel transporter family genes.[24][10] Acidobacteriota can use both inorganic and organic nitrogen as their nitrogen sources.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature[2] and National Center for Biotechnology Information.[33]

See also

References

  1. ^ Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987. S2CID 239887308.
  2. ^ a b Euzéby JP, Parte AC. "Acidobacteriota". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 6, 2022.
  3. ^ "Validation List no. 143". Int. J. Syst. Evol. Microbiol. 62: 1–4. 2012. doi:10.1099/ijs.0.68147-0.
  4. ^ Barns SM; Cain EC; Sommerville L; Kuske CR (2007). "Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum". Appl. Environ. Microbiol. 73 (9): 3113–6. Bibcode:2007ApEnM..73.3113B. doi:10.1128/AEM.02012-06. PMC 1892891. PMID 17337544.
  5. ^ a b c Quaiser A; Ochsenreiter T; Lanz C; et al. (2003). "Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics". Mol. Microbiol. 50 (2): 563–75. doi:10.1046/j.1365-2958.2003.03707.x. PMID 14617179. S2CID 25162803.
  6. ^ Rappe, M. S.; Giovannoni, S. J. (2003). "The Uncultured Microbial Majority". Annual Review of Microbiology. 57: 369–394. doi:10.1146/annurev.micro.57.030502.090759. PMID 14527284.
  7. ^ Tláskal, Vojtěch; Baldrian, Petr (2021-06-17). "Deadwood-Inhabiting Bacteria Show Adaptations to Changing Carbon and Nitrogen Availability During Decomposition". Frontiers in Microbiology. 12: 685303. doi:10.3389/fmicb.2021.685303. ISSN 1664-302X. PMC 8247643. PMID 34220772.
  8. ^ Thrash JC, Coates JD (2015). "Acidobacteria phyl. nov.". In Whitman WB (ed.). Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons. pp. 1–5. doi:10.1002/9781118960608.pbm00001. ISBN 9781118960608.
  9. ^ Dunbar, John; Barns, Susan M.; Ticknor, Lawrence O.; Kuske, Cheryl R. (2002). "Empirical and Theoretical Bacterial Diversity in Four Arizona Soils". Applied and Environmental Microbiology. American Society for Microbiology. 68 (6): 3035–3045. Bibcode:2002ApEnM..68.3035D. doi:10.1128/AEM.68.6.3035-3045.2002. OCLC 679526952. PMC 123964. PMID 12039765.
  10. ^ a b c d e f g h i j k l m n o p q r s t u Kielak, Anna M.; Barreto, Cristine C.; Kowalchuk, George A.; van Veen, Johannes A.; Kuramae, Eiko E. (2016-05-31). "The Ecology of Acidobacteria: Moving beyond Genes and Genomes". Frontiers in Microbiology. 7: 744. doi:10.3389/fmicb.2016.00744. ISSN 1664-302X. PMC 4885859. PMID 27303369.
  11. ^ Jones, Ryan T; Robeson, Michael S; Lauber, Christian L; Hamady, Micah; Knight, Rob; Fierer, Noah (2009-01-08). "A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses". The ISME Journal. 3 (4): 442–453. doi:10.1038/ismej.2008.127. ISSN 1751-7362. PMC 2997719. PMID 19129864.
  12. ^ Fierer, Noah; Bradford, Mark A.; Jackson, Robert B. (June 2007). "Toward an Ecological Classification of Soil Bacteria". Ecology. 88 (6): 1354–1364. doi:10.1890/05-1839. ISSN 0012-9658. PMID 17601128. S2CID 7687418.
  13. ^ a b Kuske CR; Barns SM; Busch JD (1 September 1997). "Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions". Appl. Environ. Microbiol. 63 (9): 3614–21. Bibcode:1997ApEnM..63.3614K. doi:10.1128/AEM.63.9.3614-3621.1997. PMC 168668. PMID 9293013.
  14. ^ Liesack, Werner; Bak, Friedhelm; Kreft, Jan-Ulrich; Stackebrandt, E. (30 June 1994). "Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds". Archives of Microbiology. 162 (1–2): 85–90. doi:10.1007/BF00264378. PMID 8085918. S2CID 23516245.
  15. ^ a b Coates, J. D.; Ellis, D. J.; Gaw, C. V.; Lovley, D. R. (1 October 1999). "Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer". International Journal of Systematic Bacteriology. 49 (4): 1615–1622. doi:10.1099/00207713-49-4-1615. PMID 10555343.
  16. ^ Fukunaga, Y; Kurahashi, M; Yanagi, K; Yokota, A; Harayama, S (November 2008). "Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'". International Journal of Systematic and Evolutionary Microbiology. 58 (Pt 11): 2597–2601. doi:10.1099/ijs.0.65589-0. PMID 18984699.
  17. ^ Kulichevskaya, IS; Suzina, NE; Liesack, W; Dedysh, SN (February 2010). "Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria". International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 2): 301–6. doi:10.1099/ijs.0.013250-0. PMID 19651730.
  18. ^ Eichorst SA; Breznak JA; Schmidt TM (2007). "Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria". Appl. Environ. Microbiol. 73 (8): 2708–17. Bibcode:2007ApEnM..73.2708E. doi:10.1128/AEM.02140-06. PMC 1855589. PMID 17293520.
  19. ^ Janssen, P. H. (2006-03-01). "Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes". Applied and Environmental Microbiology. 72 (3): 1719–1728. Bibcode:2006ApEnM..72.1719J. doi:10.1128/aem.72.3.1719-1728.2006. ISSN 0099-2240. PMC 1393246. PMID 16517615.
  20. ^ Salter, Susannah J.; Cox, Michael J.; Turek, Elena M.; Calus, Szymon T.; Cookson, William O.; Moffatt, Miriam F.; Turner, Paul; Parkhill, Julian; Loman, Nicholas J. (2014-01-01). "Reagent and laboratory contamination can critically impact sequence-based microbiome analyses". BMC Biology. 12: 87. doi:10.1186/s12915-014-0087-z. ISSN 1741-7007. PMC 4228153. PMID 25387460.
  21. ^ Sait, M.; Davis, K. E. R.; Janssen, P. H. (2006-03-01). "Effect of pH on Isolation and Distribution of Members of Subdivision 1 of the Phylum Acidobacteria Occurring in Soil". Applied and Environmental Microbiology. 72 (3): 1852–1857. Bibcode:2006ApEnM..72.1852S. doi:10.1128/aem.72.3.1852-1857.2006. ISSN 0099-2240. PMC 1393200. PMID 16517631.
  22. ^ Kleinsteuber, Sabine; Müller, Frank-Dietrich; Chatzinotas, Antonis; Wendt-Potthoff, Katrin; Harms, Hauke (January 2008). "Diversity and in situ quantification of Acidobacteria subdivision 1 in an acidic mining lake". FEMS Microbiology Ecology. 63 (1): 107–117. doi:10.1111/j.1574-6941.2007.00402.x. ISSN 0168-6496. PMID 18028401.
  23. ^ Eichorst, Stephanie A. Kuske, Cheryl R. Schmidt, Thomas M. Influence of Plant Polymers on the Distribution and Cultivation of Bacteria in the Phylum Acidobacteria ▿ †. American Society for Microbiology (ASM). OCLC 744821434.{{cite book}}: CS1 maint: multiple names: authors list (link)
  24. ^ a b c Eichorst, Stephanie A. Trojan, Daniela. Roux, Simon. Herbold, Craig. Rattei, Thomas. Woebken, Dagmar. Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments. OCLC 1051354840.{{cite book}}: CS1 maint: multiple names: authors list (link)
  25. ^ Losey, N. A.; Stevenson, B. S.; Busse, H.-J.; Damste, J. S. S.; Rijpstra, W. I. C.; Rudd, S.; Lawson, P. A. (2013-06-14). "Thermoanaerobaculum aquaticum gen. nov., sp. nov., the first cultivated member of Acidobacteria subdivision 23, isolated from a hot spring". International Journal of Systematic and Evolutionary Microbiology. 63 (Pt 11): 4149–4157. doi:10.1099/ijs.0.051425-0. ISSN 1466-5026. PMID 23771620. S2CID 32574193.
  26. ^ Kishimoto, Noriaki; Kosako, Yoshimasa; Tano, Tatsuo (31 December 1990). "Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment". Current Microbiology. 22 (1): 1–7. doi:10.1007/BF02106205. S2CID 20636659.
  27. ^ Euzeby JP. "Taxa above the rank of class - Acidobacteria". LPSN. Retrieved 26 November 2017.
  28. ^ "Genome List - Genome - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2022-06-19.
  29. ^ Li, Zijie; Gao, Yahui; Nakanishi, Hideki; Gao, Xiaodong; Cai, Li (2013-11-12). "Biosynthesis of rare hexoses using microorganisms and related enzymes". Beilstein Journal of Organic Chemistry. 9: 2434–2445. doi:10.3762/bjoc.9.281. ISSN 1860-5397. PMC 3869271. PMID 24367410.
  30. ^ Huber, K. J.; Wust, P. K.; Rohde, M.; Overmann, J.; Foesel, B. U. (2014-02-26). "Aridibacter famidurans gen. nov., sp. nov. and Aridibacter kavangonensis sp. nov., two novel members of subdivision 4 of the Acidobacteria isolated from semiarid savannah soil". International Journal of Systematic and Evolutionary Microbiology. 64 (Pt 6): 1866–1875. doi:10.1099/ijs.0.060236-0. hdl:10033/344212. ISSN 1466-5026. PMID 24573163.
  31. ^ Foesel, Bärbel U.; Rohde, Manfred; Overmann, Jörg (March 2013). "Blastocatella fastidiosa gen. nov., sp. nov., isolated from semiarid savanna soil – The first described species of Acidobacteria subdivision 4". Systematic and Applied Microbiology. 36 (2): 82–89. doi:10.1016/j.syapm.2012.11.002. ISSN 0723-2020. PMID 23266188.
  32. ^ Coates, J. D.; Ellis, D. J.; Gaw, C. V.; Lovley, D. R. (1999-10-01). "Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer". International Journal of Systematic Bacteriology. 49 (4): 1615–1622. doi:10.1099/00207713-49-4-1615. ISSN 0020-7713. PMID 10555343.
  33. ^ Sayers; et al. "Acidobacteriota". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
  34. ^ Dedysh SN, Yilmaz P. (2018). "Refining the taxonomic structure of the phylum Acidobacteria". Int J Syst Evol Microbiol. 68 (12): 3796–3806. doi:10.1099/ijsem.0.003062. PMID 30325293. S2CID 53502177.
  35. ^ "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
  36. ^ "ar53_r207.sp_label". Genome Taxonomy Database. Retrieved 20 June 2022.
  37. ^ "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
  38. ^ Tschoeke DA, Coutinho FH, Leomil L, Cavalcanti G, Silva BS, Garcia GD, Dos Anjos LC, Nascimento LB, Moreira LS, Otsuki K, Cordeiro RC, Rezende CE, Thompson FL, Thompson CC. (2020). "New bacterial and archaeal lineages discovered in organic rich sediments of a large tropical Bay". Mar Genomics. 54: 100789. doi:10.1016/j.margen.2020.100789. PMID 32563694. S2CID 219971745.

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Acidobacteriota: Brief Summary ( anglais )

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Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.

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Acidobacteria ( espagnol ; castillan )

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Las acidobacterias (Acidobacteria) constituye un subfilo[2]​ creado recientemente dentro del dominio Bacteria de especies ubicuas en el suelo.[3][4]

Sus miembros son fisiológicamente diversos siendo algunos de ellos acidófilos y fueron reconocidos por primera vez como un grupo distinto en el año 1997.[5]

Acidobacterium capsulatum fue el primer miembro descubierto en el año 1991. A pesar de que han sido muy poco estudiadas se sabe que contribuyen de manera muy importante a los ecosistemas, particularmente a aquellos en donde la tierra está involucrada.[6]​ Otros miembros de este filo son Holophaga foetida, Geothrix fermentans, Acanthopleuribacter pedis y Bryobacter aggregatus.

Como se descubrieron hace poco tiempo y muchas de ellas aún no han sido cultivadas (para el año 2013), no se conoce con exactitud su metabolismo y ecología.

Recientemente, en 2007, se ha descubierto una nueva bacteria, Candidatus Chloracidobacterium thermophilum,[7]​ la primera de este filo capaz de realizar la fototrofia basada en la bacterioclorofila.

Filogenia

Filogenéticamente, Acidobacteria estaría un grupo relacionado con Fibrobacteres según el NCBI; sin embargo, la mayoría de árboles filogenéticos lo agrupan dentro o cercano de Proteobacteria.

Se ha identificado un posible clado de proteobacterias que agruparía a Acidobacteria con Dadabacteria, Deltaproteobacteria, Modulibacteria, Nitrospinae, Nitrospirae, Rokubacteria, Tectomicrobia y Thermodesulfobacteria.[8]

Referencias

  1. Karthik Anantharaman et al. 2016, Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system Nature Communications DOI: 10.1038/ncomms13219
  2. a b Thomas Cavalier-Smith & Ema E-Yung Chao (2020). Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria). Linkspringer.
  3. Barns SM, Cain EC, Sommerville L, Kuske CR (2007). «Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum». Appl. Environ. Microbiol. 73 (9): 3113-6. PMC 1892891. PMID 17337544. doi:10.1128/AEM.02012-06.
  4. Quaiser A, Ochsenreiter T, Lanz C, et al. (2003). «Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics». Mol. Microbiol. 50 (2): 563-75. PMID 14617179. doi:10.1046/j.1365-2958.2003.03707.x.
  5. Kuske CR, Barns SM, Busch JD (1 de septiembre de 1997). «Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions». Appl. Environ. Microbiol. 63 (9): 3614-21. PMC 168668. PMID 9293013.
  6. Eichorst SA, Breznak JA, Schmidt TM (2007). «Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria». Appl. Environ. Microbiol. 73 (8): 2708-17. PMID 17293520.
  7. Donald A. et al. (27 de julio de 2007). «Candidatus Chloracidobacterium thermophilum: An Aerobic Phototrophic Acidobacterium». Science 317 (5837): 523-526.
  8. Hug, L. A., Baker, B. J., Anantharaman, K., Brown, C. T., Probst, A. J., Castelle, C. J., ... & Suzuki, Y. (2016). A new view of the tree of life. Nature Microbiology, 1, 16048.

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Acidobacteria: Brief Summary ( espagnol ; castillan )

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Las acidobacterias (Acidobacteria) constituye un subfilo​ creado recientemente dentro del dominio Bacteria de especies ubicuas en el suelo.​​

Sus miembros son fisiológicamente diversos siendo algunos de ellos acidófilos y fueron reconocidos por primera vez como un grupo distinto en el año 1997.​

Acidobacterium capsulatum fue el primer miembro descubierto en el año 1991. A pesar de que han sido muy poco estudiadas se sabe que contribuyen de manera muy importante a los ecosistemas, particularmente a aquellos en donde la tierra está involucrada.​ Otros miembros de este filo son Holophaga foetida, Geothrix fermentans, Acanthopleuribacter pedis y Bryobacter aggregatus.

Como se descubrieron hace poco tiempo y muchas de ellas aún no han sido cultivadas (para el año 2013), no se conoce con exactitud su metabolismo y ecología.

Recientemente, en 2007, se ha descubierto una nueva bacteria, Candidatus Chloracidobacterium thermophilum,​ la primera de este filo capaz de realizar la fototrofia basada en la bacterioclorofila.

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Acidobacteria ( estonien )

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Acidobacteria on bakterite hõimkond.

Hõimkonna esindajad on füsioloogiliselt mitmekesised ja mitmed neist on taluvad hästi happelist keskkonda, millest tuleneb ka hõimkonna nimetus. Neid leidub palju pinnases, kuid nende ökoloogiat ja metabolismi on seni veel vähe uuritud.

Esimene sellesse hõimkonda kuuluv liik, Acidobacterium capsulatum, avastati 1991. aastal. Hõimkond määratleti 1997. aastal.

Hõimkonda kuuluvad perekonnad: Acidicapsa, Acidobacterium, Acidopila, Bryocella, Edaphobacter, Granulicella, Telmatobacter ja Terriglobus.

Kirjandus

Välislingid


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Acidobacteria: Brief Summary ( estonien )

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Acidobacteria on bakterite hõimkond.

Hõimkonna esindajad on füsioloogiliselt mitmekesised ja mitmed neist on taluvad hästi happelist keskkonda, millest tuleneb ka hõimkonna nimetus. Neid leidub palju pinnases, kuid nende ökoloogiat ja metabolismi on seni veel vähe uuritud.

Esimene sellesse hõimkonda kuuluv liik, Acidobacterium capsulatum, avastati 1991. aastal. Hõimkond määratleti 1997. aastal.

Hõimkonda kuuluvad perekonnad: Acidicapsa, Acidobacterium, Acidopila, Bryocella, Edaphobacter, Granulicella, Telmatobacter ja Terriglobus.

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Acidobacteria

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Les Acidobacteria forment une division du règne des bactéries. Comme leur nom l'indique, elles sont acidophiles. Bien que très peu étudiée, cette division contribue particulièrement aux écosystèmes.

Classification

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Acidobacteria: Brief Summary

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Les Acidobacteria forment une division du règne des bactéries. Comme leur nom l'indique, elles sont acidophiles. Bien que très peu étudiée, cette division contribue particulièrement aux écosystèmes.

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Acidobacterias ( galicien )

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As acidobacterias (Acidobacteria) son un novo filo introducido recentemente de bacterias, formado por especies diversas fisioloxicamente e moi comúns, especialmente nos solos, pero difíciles de cultivar.[1][2][3]

Os membros deste filo están moi diversificados fisioloxicamente, e algúns (pero non todos) son acidófilos e foron considerados unha nova división en 1997. O nome do filo procede do da primeira especie descrita e non de que sexan todas acidófilas.[4] A primeira especie descrita deste filo foi Acidobacterium capsulatum, descuberta en 1991.[5] Outras especies notables son Holophaga foetida,[6] Geothrix fermentans,[7] Acanthopleuribacter pedis[8] e Bryobacter aggregatus.[9] Como estas bacterias foron descubertas recentemente e na súa gran maioría non foron cultivadas, a ecoloxía e metabolismo destas bacterias aínda está mal comprendido.[2] Porén, estas bacterias poden ser importantes nos ecosistemas, xa que son particularmente abundantes nos solos.[10]

Filoxenia

Véxase tamén: Taxonomía bacteriana.

O cladograma mostra a taxonomía actualmente aceptada do grupo baseada na LPSN (List of Prokaryotic names with Standing in Nomenclature) [11] [12] e a filoxenia está baseada na comparación das secuencias do ARNr 16S do LTP 106 do Proxecto The All-Species Living Tree Project.[13]

   

?Candidatus Chloracidobacterium thermophilum Bryant et al. 2007

   

?Candidatus Koribacter versatilis Ward et al. 2009

   

?Candidatus Solibacter usitatus Ward et al. 2009

   

?Thermotomaculum hydrothermaleIzumi et al. 2012

Holophagae

Acanthopleuribacter pedis Fukunaga et al. 2008

Holophagaceae

Geothrix fermentans Coates et al. 1999

   

Holophaga foetida Liesack et al. 1995

         

Bryobacter aggregatus Kulichevskaya et al. 2010

Acidobacteriaceae

?Acidopila roseaOkamura et al. 2011

  ?Acidicapsa ♣  

A. borealisKulichevskaya et al. 2011

   

A. ligniKulichevskaya et al. 2011

     

?Bryocella elongata Dedysh et al. 2012

   

?Telmatobacter bradus Pankratov and Dedysh 2012 <[14]

   

Acidobacterium capsulatum Kishimoto et al. 1991

    Terriglobus

T. roseus Eichorst et al. 2007

   

T. saanensis Mannisto et al. 2011

      Edaphobacter

E. aggregans Koch et al. 2008

   

E. modestus Koch et al. 2008

    Granulicella

?G. arcticaMannisto et al. 2011

   

?G. mallensisMannisto et al. 2011

   

?G. sapmiensisMannisto et al. 2011

   

?G. tundricolaMannisto et al. 2011

   

G. paludicola Pankratov e Dedysh 2010 [15]

     

G. pectinivorans Pankratov e Dedysh 2010

     

G. aggregans Pankratov e Dedysh 2010

   

G. rosea Pankratov e Dedysh 2010

                 

Notas:
♣ Especies publicadas no International Journal of Systematic Bacteriology ou no International Journal of Systematic and Evolutionary Microbiology (IJSB/IJSEM) que están en presna.
♠ Estirpes atopadas no NCBI (National Center for Biotechnology Information) pero non na LPSN.

Notas

  1. Barns SM, Cain EC, Sommerville L, Kuske CR (2007). "Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum". Appl. Environ. Microbiol. 73 (9): 3113–6. PMC 1892891. PMID 17337544. doi:10.1128/AEM.02012-06.
  2. 2,0 2,1 Quaiser A, Ochsenreiter T, Lanz C; et al. (2003). "Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics". Mol. Microbiol. 50 (2): 563–75. PMID 14617179. doi:10.1046/j.1365-2958.2003.03707.x.
  3. Rappé MS; Giovannoni SJ (2003). "The uncultured microbial majority". Annual review of microbiology (en inglés) 53. ISSN 0066-4227. PMID 14527284.
  4. Kuske CR, Barns SM, Busch JD (1 September 1997). "Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions". Appl. Environ. Microbiol. 63 (9): 3614–21. PMC 168668. PMID 9293013.
  5. KISHIMOTO (N.), KOSAKO (Y.) and TANO (T.): Acidobacterium capsulatum gen. nov., sp. nov.: an acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment. Curr. Microbiol., 1991, 22, 1-7.
  6. LIESACK (W.), BAK (F.), KREFT (J.U.) and STACKEBRANDT (E.): Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds. Arch. Microbiol., 1994, 162, 85-90.
  7. COATES (J.D.), ELLIS (D.J.), GAW (C.V.) and LOVLEY (D.R.): Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. Int. J. Syst. Bacteriol., 1999, 49, 1615-1622.
  8. FUKUNAGA (Y.), KURAHASHI (M.), YANAGI (K.), YOKOTA (A.) and HARAYAMA (S.): Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'. Int. J. Syst. Evol. Microbiol., 2008, 58, 2597-2601.
  9. KULICHEVSKAYA (I.S.), SUZINA (N.E.), LIESACK (W.) and DEDYSH (S.N.): Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria. Int. J. Syst. Evol. Microbiol., 2010, 60, 301-306.
  10. Eichorst SA, Breznak JA, Schmidt TM (2007). "Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria". Appl. Environ. Microbiol. 73 (8): 2708–17. PMC 1855589. PMID 17293520. doi:10.1128/AEM.02140-06.
  11. Ver List of Prokaryotic names with Standing in Nomenclature. Datos de J.P. Euzéby. "Acidobacteria". Arquivado dende o orixinal o 27 de xaneiro de 2013. Consultado o 6 xullo 2012.
  12. Ver NCBI webpage on Chlorobi Datos de Sayers; et al. "NCBI Taxonomy Browser". National Center for Biotechnology Information. Consultado o 2011-06-05.
  13. See the All-Species Living Tree Project [1]. Data extracted from the "16S rRNA-based LTP release 106 (full tree)" (PDF). Silva Comprehensive Ribosomal RNA Database. Consultado o 6 xullo 2012.
  14. Pankratov, T. A.; Kirsanova, L. A.; Kaparullina, E. N.; Kevbrin, V. V. & Dedysh, S. N. (2012-02-01). "Telmatobacter bradus gen. nov., sp. nov., a cellulolytic facultative anaerobe from subdivision 1 of the Acidobacteria, and emended description of Acidobacterium capsulatum Kishimoto et al. 1991". INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (en inglés) 62 (2): 430–437. ISSN 1466-5026. doi:10.1099/ijs.0.029629-0.
  15. Pankratov T.A., Dedysh S.N. Granulicella paludicola gen. nov., sp. nov., G. pectinivorans sp. nov., G. aggregans sp. nov. and G. rosea sp. nov., novel acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs. IJSEM 2010, V. 60. P. 2951-2959.

Véxase tamén

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wikipedia gl Galician

Acidobacterias: Brief Summary ( galicien )

fourni par wikipedia gl Galician

As acidobacterias (Acidobacteria) son un novo filo introducido recentemente de bacterias, formado por especies diversas fisioloxicamente e moi comúns, especialmente nos solos, pero difíciles de cultivar.

Os membros deste filo están moi diversificados fisioloxicamente, e algúns (pero non todos) son acidófilos e foron considerados unha nova división en 1997. O nome do filo procede do da primeira especie descrita e non de que sexan todas acidófilas. A primeira especie descrita deste filo foi Acidobacterium capsulatum, descuberta en 1991. Outras especies notables son Holophaga foetida, Geothrix fermentans, Acanthopleuribacter pedis e Bryobacter aggregatus. Como estas bacterias foron descubertas recentemente e na súa gran maioría non foron cultivadas, a ecoloxía e metabolismo destas bacterias aínda está mal comprendido. Porén, estas bacterias poden ser importantes nos ecosistemas, xa que son particularmente abundantes nos solos.

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Acidobacteria ( lituanien )

fourni par wikipedia LT

Acidobacteria (liet. Acidobakterijos) – bakterijų tipas. Acidobakterijos yra fiziologiškai skirtingos ir visur išplitusios, dažniausiai dirvožemyje.[1][2][3]

Aprašymas

Šio tipo nariai yra fiziologiškai įvairūs ir aptinkami įvairiausiose aplinkose, įskaitant dirvožemį, karštąsias versmes, vandenynus, urvus ir metalu užterštus dirvožemius.[4] Daugybė acidobakterijų yra acidofilai – klesti esant labai rūgštinėms sąlygoms, įskaitant ir pirmąją aprašytą šio tipo rūšį Acidobacterium capsulatum.[5]

Kitos žinomos rūšys yra Holophaga foetida,[6] Geothrix fermentans,[7] Acanthopleuribacter pedis[8] ir Bryobacter aggregatus.[9] Kadangi acidobakterijos buvo atrastos nesenai ir didžioji dauguma jų dar nebuvo auginamos, šių bakterijų ekologija ir metabolizmas iki galo nėra suprastas.[2] Tačiau šios bakterijos gali būti svarbus veiksnys ekosistemoje, kadangi jų yra ypač gausu dirvožemyje.[10]

Istorija

Pirmoji acidobakterijų rūšis, Acidobacterium capsulatum, atrasta 1991 m.[11]

Šaltiniai

  1. Barns SM. „Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum“. Appl. Environ. Microbiol., 73 (9), 3113–6 (2007). DOI:10.1128/AEM.02012-06. PMID 17337544.
  2. 2,0 2,1 Quaiser A. „Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics“. Mol. Microbiol., 50 (2), 563–75 (2003). DOI:10.1046/j.1365-2958.2003.03707.x. PMID 14617179.
  3. „The Uncultured Microbial Majority“. Annual Review of Microbiology, 57, 369–394 (2003). DOI:10.1146/annurev.micro.57.030502.090759. PMID 14527284.
  4. (2015) “Acidobacteria phyl. nov.”, Whitman WB Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons. DOI:10.1002/9781118960608.pbm00001.
  5. Kuske CR. „Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions“. Appl. Environ. Microbiol., 63 (9), 3614–21 (1 September 1997). PMID 9293013.
  6. Liesack, Werner. „Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds“. Archives of Microbiology, 162 (1–2), 85–90 (30 June 1994). DOI:10.1007/BF00264378. PMID 8085918.
  7. Coates, J. D.. „Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer“. International Journal of Systematic Bacteriology, 49 (4), 1615–1622 (1 October 1999). DOI:10.1099/00207713-49-4-1615. PMID 10555343.
  8. Fukunaga, Y. „Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'“. International Journal of Systematic and Evolutionary Microbiology, 58 (Pt 11), 2597–2601 (November 2008). DOI:10.1099/ijs.0.65589-0. PMID 18984699.
  9. Kulichevskaya, IS. „Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria“. International Journal of Systematic and Evolutionary Microbiology, 60 (Pt 2), 301–6 (February 2010). DOI:10.1099/ijs.0.013250-0. PMID 19651730.
  10. Eichorst SA. „Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria“. Appl. Environ. Microbiol., 73 (8), 2708–17 (2007). DOI:10.1128/AEM.02140-06. PMID 17293520.
  11. Kishimoto, Noriaki. „Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment“. Current Microbiology, 22 (1), 1–7 (31 December 1990). DOI:10.1007/BF02106205.

Nuorodos

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Acidobacteria: Brief Summary ( lituanien )

fourni par wikipedia LT

Acidobacteria (liet. Acidobakterijos) – bakterijų tipas. Acidobakterijos yra fiziologiškai skirtingos ir visur išplitusios, dažniausiai dirvožemyje.

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Acidobaktērijas ( letton )

fourni par wikipedia LV

Acidobaktērijas (Acidobacteria Cavalier-Smith, 2002) ir baktēriju valsts tips, kuru pārstāvji fizioloģiski atšķiras no pārējām baktērijām un sastopami visur, galvenokārt augsnē. Daži ir acidofilētiķi, kuriem patīk skāba vide.

Acidobaktērijas ir grūti kultivējamo baktēriju grupa, kuru 1992. gadā iedalīja atsevišķā tipā drīz pēc pirmā pārstāvja Acidobacterium capsulatum aprakstīšanas. Līdz 2010. gadam ir atklātas jaunas 6 ģintis un 10 sugas.

Sugas:

Literatūra

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wikipedia LV

Acidobaktērijas: Brief Summary ( letton )

fourni par wikipedia LV

Acidobaktērijas (Acidobacteria Cavalier-Smith, 2002) ir baktēriju valsts tips, kuru pārstāvji fizioloģiski atšķiras no pārējām baktērijām un sastopami visur, galvenokārt augsnē. Daži ir acidofilētiķi, kuriem patīk skāba vide.

Acidobaktērijas ir grūti kultivējamo baktēriju grupa, kuru 1992. gadā iedalīja atsevišķā tipā drīz pēc pirmā pārstāvja Acidobacterium capsulatum aprakstīšanas. Līdz 2010. gadam ir atklātas jaunas 6 ģintis un 10 sugas.

Sugas:

Acidobacterium capsulatum Holophaga foetida Terriglobus roseus Chloracidobacterium thermophilum Bryobacter aggregatus Edaphobacter modestus Edaphobacter aggregans Acanthopleuribacter pedis Granulicella paludicola Granulicella pectinivorans Granulicella aggregans Granulicella rosea
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Acidobacteria ( portugais )

fourni par wikipedia PT

Acidobacteria é um filo de bactérias recém descrito.[1][2] Como implica seu nome, elas são acidofílicas e foram reconhecidas como grupo distinto em 1997.[3] A maioria das cepas conhecidas não possui cultura, e sua ecologia e metabolismo não é bem compreendido.[2] Entretanto, estas bactérias podem ter um importante contribuição no ecossistema, já que são particularmente abundantes no solo.[4]

Referências

  1. Barns SM, Cain EC, Sommerville L, Kuske CR (2007). «Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum». Appl. Environ. Microbiol. 73 (9): 3113–6. PMID 17337544. doi:10.1128/AEM.02012-06
  2. a b Quaiser A, Ochsenreiter T, Lanz C; et al. (2003). «Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics». Mol. Microbiol. 50 (2): 563–75. PMID 14617179. doi:10.1046/j.1365-2958.2003.03707.x
  3. Kuske CR, Barns SM, Busch JD (1 de setembro de 1997). «Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions». Appl. Environ. Microbiol. 63 (9): 3614–21. PMID 9293013
  4. Eichorst SA, Breznak JA, Schmidt TM (2007). «Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria». Appl. Environ. Microbiol. 73 (8): 2708–17. PMID 17293520. doi:10.1128/AEM.02140-06
 title=
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droit d’auteur
Autores e editores de Wikipedia
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wikipedia PT

Acidobacteria: Brief Summary ( portugais )

fourni par wikipedia PT

Acidobacteria é um filo de bactérias recém descrito. Como implica seu nome, elas são acidofílicas e foram reconhecidas como grupo distinto em 1997. A maioria das cepas conhecidas não possui cultura, e sua ecologia e metabolismo não é bem compreendido. Entretanto, estas bactérias podem ter um importante contribuição no ecossistema, já que são particularmente abundantes no solo.

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아키도박테리움균류 ( coréen )

fourni par wikipedia 한국어 위키백과

아키도박테리움균류(-菌類)는 아키도박테리움균문(Acidobacteria) 또는 산간균문[1]에 속하는 새로운 세균 문의 하나이다. 생리학적으로 매우 다양하며, 여러 곳 특히 토양 속에서 발견되지만, 배양 여부는 아직 알려져 있지 않다.[2][3]

각주

  1. 한국어 번역어가 없어 중국어판 위키백과의 표제어('酸桿菌門')를 번역한 용어이다.
  2. Barns SM, Cain EC, Sommerville L, Kuske CR (2007). “Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum”. 《Appl. Environ. Microbiol.》 73 (9): 3113–6. doi:10.1128/AEM.02012-06. PMC 1892891. PMID 17337544.
  3. Quaiser A, Ochsenreiter T, Lanz C; 외. (2003). “Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics”. 《Mol. Microbiol.》 50 (2): 563–75. doi:10.1046/j.1365-2958.2003.03707.x. PMID 14617179.
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