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Kohteen GGBN data coverage tuontiloki

  • Started: July 29, 2024 10:24
  • Completed: 11:37:05
  • Failed: No.
  • Status: completed

Events (most recent first):

näytä (34) varoitusta
  • 11:32:12 (infos) ++ NUKE: NodeAncestor (0) fast:135>resource:260,260,260,315,306
  • 11:32:12 (starts) Publishing::Fast.by_resource delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,132
  • 11:32:12 (starts) Running delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,132
  • 10:56:16 (ends) Complete delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,177
  • 10:56:16 (ends) TOTAL TIME: 31.7m delayed_job:71>base:81>delayed_job:21>resource:229>fast:10,176
  • 10:56:16 (errors) Manual failure called, process must have died. (Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv) base:81>delayed_job:21>resource:229>fast:10,172,174
  • 10:56:16 (warns) Trait Publishing failed: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv FROM /gems/ruby/3.3.0/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:536:in `merge_triple' << /app/lib/trait_bank/slurp.rb:421:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:421:in `each' << /app/lib/trait_bank/slurp.rb:421:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:297:in `block (2 levels) in load_csv' delayed_job:21>resource:229>fast:10,160,203,207
  • 10:56:16 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) FROM: #merge_triple QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MATCH (page:Page { page_id: toInteger(row.page_id) }) MATCH (trait:Trait { eol_pk: row.eol_pk })} slurp:297,421,421,421,535,538
  • 10:56:16 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MATCH (page:Page { page_id: toInteger(row.page_id) }) MATCH (trait:Trait { eol_pk: row.eol_pk }) MERGE (page)-[:trait]->(trait)} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:421,421,421,536,566,574
  • 10:56:16 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk }) ON CREATE SET trait.resource_pk = row.resource_pk ON MATCH SET trait.resource_pk = row.resource_pk ON CREATE SET trait.source = row.source ON MATCH SET trait.source = row.source ON CREATE SET trait.literal = row.literal ON MATCH SET trait.literal = row.literal ON CREATE SET trait.measurement = row.measurement ON MATCH SET trait.measurement = row.measurement ON CREATE SET trait.scientific_name = row.scientific_name ON MATCH SET trait.scientific_name = row.scientific_name ON CREATE SET trait.normal_measurement = row.normal_measurement ON MATCH SET trait.normal_measurement = row.normal_measurement ON CREATE SET trait.sample_size = row.sample_size ON MATCH SET trait.sample_size = row.sample_size ON CREATE SET trait.citation = row.citation ON MATCH SET trait.citation = row.citation ON CREATE SET trait.remarks = row.remarks ON MATCH SET trait.remarks = row.remarks ON CREATE SET trait.method = row.method ON MATCH SET trait.method = row.method} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:279,279,282,505,566,574
  • 10:56:14 (warns) ...re-trying. slurp:338,311,279,279,281,290
  • 10:51:14 (warns) FAILED on build_nodes query (Trait), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)... slurp:338,311,279,279,281,286
  • 10:51:14 (warns) Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:338,311,279,279,281,285
  • 10:51:14 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk }) ON CREATE SET trait.resource_pk = row.resource_pk ON MATCH SET trait.resource_pk = row.resource_pk ON CREATE SET trait.source = row.source ON MATCH SET trait.source = row.source ON CREATE SET trait.literal = row.literal ON MATCH SET trait.literal = row.literal ON CREATE SET trait.measurement = row.measurement ON MATCH SET trait.measurement = row.measurement ON CREATE SET trait.scientific_name = row.scientific_name ON MATCH SET trait.scientific_name = row.scientific_name ON CREATE SET trait.normal_measurement = row.normal_measurement ON MATCH SET trait.normal_measurement = row.normal_measurement ON CREATE SET trait.sample_size = row.sample_size ON MATCH SET trait.sample_size = row.sample_size ON CREATE SET trait.citation = row.citation ON MATCH SET trait.citation = row.citation ON CREATE SET trait.remarks = row.remarks ON MATCH SET trait.remarks = row.remarks ON CREATE SET trait.method = row.method ON MATCH SET trait.method = row.method} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:279,279,282,505,566,574
  • 10:51:14 (warns) ...re-trying. slurp:338,311,279,279,281,290
  • 10:46:14 (warns) FAILED on build_nodes query (Trait), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)... slurp:338,311,279,279,281,286
  • 10:46:14 (warns) Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:338,311,279,279,281,285
  • 10:46:14 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk }) ON CREATE SET trait.resource_pk = row.resource_pk ON MATCH SET trait.resource_pk = row.resource_pk ON CREATE SET trait.source = row.source ON MATCH SET trait.source = row.source ON CREATE SET trait.literal = row.literal ON MATCH SET trait.literal = row.literal ON CREATE SET trait.measurement = row.measurement ON MATCH SET trait.measurement = row.measurement ON CREATE SET trait.scientific_name = row.scientific_name ON MATCH SET trait.scientific_name = row.scientific_name ON CREATE SET trait.normal_measurement = row.normal_measurement ON MATCH SET trait.normal_measurement = row.normal_measurement ON CREATE SET trait.sample_size = row.sample_size ON MATCH SET trait.sample_size = row.sample_size ON CREATE SET trait.citation = row.citation ON MATCH SET trait.citation = row.citation ON CREATE SET trait.remarks = row.remarks ON MATCH SET trait.remarks = row.remarks ON CREATE SET trait.method = row.method ON MATCH SET trait.method = row.method} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:279,279,282,505,566,574
  • 10:46:11 (warns) ...re-trying. slurp:338,311,279,279,281,290
  • 10:41:11 (warns) FAILED on build_nodes query (Trait), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)... slurp:338,311,279,279,281,286
  • 10:41:11 (warns) Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:338,311,279,279,281,285
  • 10:41:11 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (trait:Trait { eol_pk: row.eol_pk }) ON CREATE SET trait.resource_pk = row.resource_pk ON MATCH SET trait.resource_pk = row.resource_pk ON CREATE SET trait.source = row.source ON MATCH SET trait.source = row.source ON CREATE SET trait.literal = row.literal ON MATCH SET trait.literal = row.literal ON CREATE SET trait.measurement = row.measurement ON MATCH SET trait.measurement = row.measurement ON CREATE SET trait.scientific_name = row.scientific_name ON MATCH SET trait.scientific_name = row.scientific_name ON CREATE SET trait.normal_measurement = row.normal_measurement ON MATCH SET trait.normal_measurement = row.normal_measurement ON CREATE SET trait.sample_size = row.sample_size ON MATCH SET trait.sample_size = row.sample_size ON CREATE SET trait.citation = row.citation ON MATCH SET trait.citation = row.citation ON CREATE SET trait.remarks = row.remarks ON MATCH SET trait.remarks = row.remarks ON CREATE SET trait.method = row.method ON MATCH SET trait.method = row.method} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:279,279,282,505,566,574
  • 10:41:11 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:279,279,282,505,566,574
  • 10:41:11 (warns) ...re-trying. slurp:338,311,279,279,281,290
  • 10:36:11 (warns) FAILED on build_nodes query (Page), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)... slurp:338,311,279,279,281,286
  • 10:36:11 (warns) Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:338,311,279,279,281,285
  • 10:36:11 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:279,279,282,505,566,574
  • 10:36:08 (warns) ...re-trying. slurp:338,311,279,279,281,290
  • 10:31:08 (warns) FAILED on build_nodes query (Page), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)... slurp:338,311,279,279,281,286
  • 10:31:08 (warns) Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:338,311,279,279,281,285
  • 10:31:08 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:279,279,282,505,566,574
  • 10:31:06 (warns) ...re-trying. slurp:338,311,279,279,281,290
  • 10:26:06 (warns) FAILED on build_nodes query (Page), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)... slurp:338,311,279,279,281,286
  • 10:26:06 (warns) Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:338,311,279,279,281,285
  • 10:26:06 (warns) Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv' AS row WITH row WHERE 1=1 MERGE (page:Page { page_id: toInteger(row.page_id) })} MESSAGE: Couldn't load the external resource at: https://eol.org/data/ggbn_data_covera/publish_traits_chunk_1.csv slurp:279,279,282,505,566,574
  • 10:26:06 (infos) Importing 99001 rows from publish_traits_chunk_1.csv slurp:324>each:9,9>slurp:338,311,276
  • 10:26:05 (warns) Found 188411 rows, will break up into 2 of 99000 fast:204,335>slurp:30,586,274,309
  • 10:26:05 (infos) adding new traits fast:10,160,204,335>slurp:30,585
  • 10:26:05 (infos) not removing any traits fast:10,160,204,335>slurp:29,614
  • 10:26:03 (infos) polling for trait diff metadata: /resources/1222/publish_diffs.json fast:204,335>slurp:20>content_server_connection:38,156,83
  • 10:26:03 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo base:81>delayed_job:21>resource:229>fast:10,160,202
  • 10:26:03 (starts) Fixing native nodes... base:81>delayed_job:21>resource:229>fast:10,155>page_creator:39
  • 10:26:03 (warns) Skipping reindexing. You should reindex soon. base:81>delayed_job:21>resource:229>fast:10,155>page_creator:32
  • 10:26:03 (infos) importing 196 Pages fast:155>page_creator:25>grouping:39,39,39>page_creator:26
  • 10:26:03 (infos) importing 1000 Pages page_creator:25>grouping:39,39,39,39>page_creator:26
  • 10:26:02 (infos) importing 1000 Pages page_creator:25>grouping:39,39,39,39>page_creator:26
  • 10:26:02 (infos) importing 1000 Pages page_creator:25>grouping:39,39,39,39>page_creator:26
  • 10:26:02 (infos) importing 1000 Pages page_creator:25>grouping:39,39,39,39>page_creator:26
  • 10:26:02 (infos) importing 1000 Pages page_creator:25>grouping:39,39,39,39>page_creator:26
  • 10:26:02 (infos) importing 1000 Pages page_creator:25>grouping:39,39,39,39>page_creator:26
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